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Each gene or protein on a graph is represented as a colored node (vertex) and connected to other nodes (vertices) by lines (edges) of variable thickness and color based on the similarity of genes or proteins (distance matrix). The user positions these nodes in such a way as to optimize visualization of the inter-relationships between the nodes. Unlike classical phylogenetic trees, the physical distances on the graph between nodes have no information content. The level of similarity between genes or proteins on PhyloGrapher's graphs is indicated by color and line thickness.
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| Help List | <akozik@atgc.org> |
| Developer List | <akozik@atgc.org> |
| Bug List | <akozik@atgc.org> |
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| Interfaces | X Window System |
| Source languages | Tcl/Tk |
| Weak prerequisites | fasta (ftp://ftp.virginia.edu/pub/fasta) |
| Related programs | Open BEAGLE, GAUL |
| License verified by | Janet Casey <jcasey@gnu.org> on 2002-11-07 |
| Entry compiled by | Janet Casey <jcasey@gnu.org> |
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