CaCORE::CaBIO::Taxon - Perl extension for Taxon.
The CaCORE::CaBIO::bean::Taxon is a Perl object representation of the caBIO generic object.
An object representing the various names (scientific, common, abbreviated, etc.) for a species associated with a specific instance of a Gene, Chromosome, Pathway, Protein, or Tissue.
The following are all the attributes of the Taxon object and their data types:
scientificName string ethnicityStrain string abbreviation string commonName string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Taxon:
Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene. Protein: One to many assoication, use getProteinCollection to get a collection of associated Protein. Pathway: One to many assoication, use getPathwayCollection to get a collection of associated Pathway. Tissue: One to many assoication, use getTissueCollection to get a collection of associated Tissue. Chromosome: One to many assoication, use getChromosomeCollection to get a collection of associated Chromosome. Clone: One to many assoication, use getCloneCollection to get a collection of associated Clone. End Associations and related methods
Agent
CaCORE::CaBIO::Agent - Perl extension for Agent.
Abstract
The CaCORE::CaBIO::bean::Agent is a Perl object representation of the caBIO generic object.
Description
A therapeutic agent (drug, intervention therapy) used in a clinical trail protocol.
Attributes of Agent
The following are all the attributes of the Agent object and their data types:isCMAPAgent boolean comment string source string NSCNumber long name string EVSId string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Agent
The following are all the objects that are associated with the Agent:Target: One to many assoication, use getTargetCollection to get a collection of associated Target. ClinicalTrialProtocol: One to many assoication, use getClinicalTrialProtocolCollection to get a collection of associated ClinicalTrialProtocol. End Associations and related methods
Chromosome
CaCORE::CaBIO::Chromosome - Perl extension for Chromosome.
Abstract
The CaCORE::CaBIO::bean::Chromosome is a Perl object representation of the caBIO generic object.
Description
An object representing a specific chromosome for a specific taxon; provides access to all known genes contained in the chromosome and to the taxon.
Attributes of Chromosome
The following are all the attributes of the Chromosome object and their data types:id long number string End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Chromosome
The following are all the objects that are associated with the Chromosome:Taxon: Many to one assoication, use getTaxon to get the associated Taxon. Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene. Location: One to many assoication, use getLocationCollection to get a collection of associated Location. End Associations and related methods
Gene
CaCORE::CaBIO::Gene - Perl extension for Gene.
Abstract
The CaCORE::CaBIO::bean::Gene is a Perl object representation of the caBIO generic object.
Description
Gene objects are the effective portal to most of the genomic information provided by the caBIO data services; organs, diseases, chromosomes, pathways, sequence data, and expression experiments are among the many objects accessible via a gene.
Attributes of Gene
The following are all the attributes of the Gene object and their data types:id long clusterId long symbol string fullName string End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Gene
The following are all the objects that are associated with the Gene:GeneOntology: One to many assoication, use getGeneOntologyCollection to get a collection of associated GeneOntology. GeneAlias: One to many assoication, use getGeneAliasCollection to get a collection of associated GeneAlias. Protein: One to many assoication, use getProteinCollection to get a collection of associated Protein. ExpressionFeature: One to many assoication, use getExpressionFeatureCollection to get a collection of associated ExpressionFeature. Pathway: One to many assoication, use getPathwayCollection to get a collection of associated Pathway. OrganOntology: One to many assoication, use getOrganOntologyCollection to get a collection of associated OrganOntology. Taxon: Many to one assoication, use getTaxon to get the associated Taxon. Library: One to many assoication, use getLibraryCollection to get a collection of associated Library. GeneRelativeLocation: One to many assoication, use getGeneRelativeLocationCollection to get a collection of associated GeneRelativeLocation. Chromosome: Many to one assoication, use getChromosome to get the associated Chromosome. DatabaseCrossReference: One to many assoication, use getDatabaseCrossReferenceCollection to get a collection of associated DatabaseCrossReference. GenericReporter: One to many assoication, use getGenericReporterCollection to get a collection of associated GenericReporter. Target: One to many assoication, use getTargetCollection to get a collection of associated Target. Histopathology: One to many assoication, use getHistopathologyCollection to get a collection of associated Histopathology. Location: One to many assoication, use getLocationCollection to get a collection of associated Location. NucleicAcidSequence: One to many assoication, use getNucleicAcidSequenceCollection to get a collection of associated NucleicAcidSequence. HomologousAssociation: One to many assoication, use getHomologousAssociationCollection to get a collection of associated HomologousAssociation. End Associations and related methods
Vocabulary
CaCORE::CaBIO::Vocabulary - Perl extension for Vocabulary.
Abstract
The CaCORE::CaBIO::bean::Vocabulary is a Perl object representation of the caBIO generic object.
Description
The object describes the vocabulary.
Attributes of Vocabulary
The following are all the attributes of the Vocabulary object and their data types:generalTerm string coreTerm string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Vocabulary
The following are all the objects that are associated with the Vocabulary:Anomaly: One to many assoication, use getAnomalyCollection to get a collection of associated Anomaly. End Associations and related methods
Protocol
CaCORE::CaBIO::Protocol - Perl extension for Protocol.
Abstract
The CaCORE::CaBIO::bean::Protocol is a Perl object representation of the caBIO generic object.
Description
An object representation of the protocol used in assembling a clone library.
Attributes of Protocol
The following are all the attributes of the Protocol object and their data types:type string description string name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Protocol
The following are all the objects that are associated with the Protocol:Library: One to many assoication, use getLibraryCollection to get a collection of associated Library. Tissue: One to many assoication, use getTissueCollection to get a collection of associated Tissue. End Associations and related methods
Tissue
CaCORE::CaBIO::Tissue - Perl extension for Tissue.
Abstract
The CaCORE::CaBIO::bean::Tissue is a Perl object representation of the caBIO generic object.
Description
A group of similar cells united to perform a specific function.
Attributes of Tissue
The following are all the attributes of the Tissue object and their data types:type string cellType string histology string id long sex string cellLine string supplier string developmentalStage string description string organ string name string End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Tissue
The following are all the objects that are associated with the Tissue:Protocol: Many to one assoication, use getProtocol to get the associated Protocol. Taxon: Many to one assoication, use getTaxon to get the associated Taxon. Library: One to many assoication, use getLibraryCollection to get a collection of associated Library. End Associations and related methods
SNP
CaCORE::CaBIO::SNP - Perl extension for SNP.
Abstract
The CaCORE::CaBIO::bean::SNP is a Perl object representation of the caBIO generic object.
Description
An object representing a Single Nucleotide Polymorphism; provides access to the clones and the trace files from which it was identified, the two most common substitutions at that position, the offset of the SNP in the parent sequence, and a confidence score.
Attributes of SNP
The following are all the attributes of the SNP object and their data types:alleleA string validationStatus string alleleB string DBSNPID string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of SNP
The following are all the objects that are associated with the SNP:DatabaseCrossReference: One to many assoication, use getDatabaseCrossReferenceCollection to get a collection of associated DatabaseCrossReference. PopulationFrequency: One to many assoication, use getPopulationFrequencyCollection to get a collection of associated PopulationFrequency. Location: One to many assoication, use getLocationCollection to get a collection of associated Location. GeneRelativeLocation: One to many assoication, use getGeneRelativeLocationCollection to get a collection of associated GeneRelativeLocation. End Associations and related methods
GeneAlias
CaCORE::CaBIO::GeneAlias - Perl extension for GeneAlias.
Abstract
The CaCORE::CaBIO::bean::GeneAlias is a Perl object representation of the caBIO generic object.
Description
This object describes the gene alias.
Attributes of GeneAlias
The following are all the attributes of the GeneAlias object and their data types:name string type string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of GeneAlias
The following are all the objects that are associated with the GeneAlias:Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene. End Associations and related methods
Library
CaCORE::CaBIO::Library - Perl extension for Library.
Abstract
The CaCORE::CaBIO::bean::Library is a Perl object representation of the caBIO generic object.
Description
An object representing a CGAP library; provides access to information about: the tissue sample and its method of preparation, the library protocol that was used, the clones contained in the library, and the sequence information derived from the library.
Attributes of Library
The following are all the attributes of the Library object and their data types:type string rsite1 string creationDate dateTime labHost string cloneVector string id long clonesToDate long sequencesToDate long keyword string description string cloneProducer string rsite2 string cloneVectorType string uniGeneId long name string End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Library
The following are all the objects that are associated with the Library:Protocol: Many to one assoication, use getProtocol to get the associated Protocol. Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene. Clone: One to many assoication, use getCloneCollection to get a collection of associated Clone. Tissue: Many to one assoication, use getTissue to get the associated Tissue. Histopathology: One to many assoication, use getHistopathologyCollection to get a collection of associated Histopathology. End Associations and related methods
Clone
CaCORE::CaBIO::Clone - Perl extension for Clone.
Abstract
The CaCORE::CaBIO::bean::Clone is a Perl object representation of the caBIO generic object.
Description
An object used to hold information pertaining to I.M.A.G.E. clones; provides access to sequence information, associated trace files, and the clone's library.
Attributes of Clone
The following are all the attributes of the Clone object and their data types:type string insertSize long name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Clone
The following are all the objects that are associated with the Clone:Taxon: One to many assoication, use getTaxonCollection to get a collection of associated Taxon. CloneRelativeLocation: One to many assoication, use getCloneRelativeLocationCollection to get a collection of associated CloneRelativeLocation. Library: Many to one assoication, use getLibrary to get the associated Library. NucleicAcidSequence: One to many assoication, use getNucleicAcidSequenceCollection to get a collection of associated NucleicAcidSequence. End Associations and related methods
Target
CaCORE::CaBIO::Target - Perl extension for Target.
Abstract
The CaCORE::CaBIO::bean::Target is a Perl object representation of the caBIO generic object.
Description
A gene thought to be at the root of a disease etiology, and which is targeted for therapeutic intervention in a clinical trial.
Attributes of Target
The following are all the attributes of the Target object and their data types:type string name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Target
The following are all the objects that are associated with the Target:Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene. Agent: One to many assoication, use getAgentCollection to get a collection of associated Agent. Anomaly: One to many assoication, use getAnomalyCollection to get a collection of associated Anomaly. End Associations and related methods
Location
CaCORE::CaBIO::Location - Perl extension for Location.
Abstract
The CaCORE::CaBIO::bean::Location is a Perl object representation of the caBIO generic object.
Description
Attributes of Location
The following are all the attributes of the Location object and their data types:id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Location
The following are all the objects that are associated with the Location:SNP: Many to one assoication, use getSNP to get the associated SNP. Gene: Many to one assoication, use getGene to get the associated Gene. NucleicAcidSequence: Many to one assoication, use getNucleicAcidSequence to get the associated NucleicAcidSequence. Chromosome: Many to one assoication, use getChromosome to get the associated Chromosome. End Associations and related methods
CloneRelativeLocation
CaCORE::CaBIO::CloneRelativeLocation - Perl extension for CloneRelativeLocation.
Abstract
The CaCORE::CaBIO::bean::CloneRelativeLocation is a Perl object representation of the caBIO generic object.
Description
Attributes of CloneRelativeLocation
The following are all the attributes of the CloneRelativeLocation object and their data types:type string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of CloneRelativeLocation
The following are all the objects that are associated with the CloneRelativeLocation:Clone: Many to one assoication, use getClone to get the associated Clone. NucleicAcidSequence: Many to one assoication, use getNucleicAcidSequence to get the associated NucleicAcidSequence. End Associations and related methods
NucleicAcidSequence
CaCORE::CaBIO::NucleicAcidSequence - Perl extension for NucleicAcidSequence.
Abstract
The CaCORE::CaBIO::bean::NucleicAcidSequence is a Perl object representation of the caBIO generic object.
Description
An object representation of a nucleic acid sequence; provides access to the clones from which it was derived.
Attributes of NucleicAcidSequence
The following are all the attributes of the NucleicAcidSequence object and their data types:value string type string length long accessionNumber string id long accessionNumberVersion string End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of NucleicAcidSequence
The following are all the objects that are associated with the NucleicAcidSequence:Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene. DatabaseCrossReference: One to many assoication, use getDatabaseCrossReferenceCollection to get a collection of associated DatabaseCrossReference. Location: Many to one assoication, use getLocation to get the associated Location. CloneRelativeLocation: Many to one assoication, use getCloneRelativeLocation to get the associated CloneRelativeLocation. End Associations and related methods
DiseaseOntology
CaCORE::CaBIO::DiseaseOntology - Perl extension for DiseaseOntology.
Abstract
The CaCORE::CaBIO::bean::DiseaseOntology is a Perl object representation of the caBIO generic object.
Description
Disease objects specify a disease name and ID; disease objects also provide access to: ontological relations to other diseases; clinical trial protocols treating the disease; and specific histologies associated with instances of the disease.
Attributes of DiseaseOntology
The following are all the attributes of the DiseaseOntology object and their data types:name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of DiseaseOntology
The following are all the objects that are associated with the DiseaseOntology:ParentDiseaseOntologyRelationship: One to many assoication, use getParentDiseaseOntologyRelationshipCollection to get a collection of associated ParentDiseaseOntologyRelationship. ChildDiseaseOntologyRelationship: One to many assoication, use getChildDiseaseOntologyRelationshipCollection to get a collection of associated ChildDiseaseOntologyRelationship. Histopathology: One to many assoication, use getHistopathologyCollection to get a collection of associated Histopathology. ClinicalTrialProtocol: One to many assoication, use getClinicalTrialProtocolCollection to get a collection of associated ClinicalTrialProtocol. End Associations and related methods
ClinicalTrialProtocol
CaCORE::CaBIO::ClinicalTrialProtocol - Perl extension for ClinicalTrialProtocol.
Abstract
The CaCORE::CaBIO::bean::ClinicalTrialProtocol is a Perl object representation of the caBIO generic object.
Description
The protocol associated with a clinical trial; organizes administrative information about the trial such as Organization ID, participants, phase, etc., and provides access to the administered Agents.
Attributes of ClinicalTrialProtocol
The following are all the attributes of the ClinicalTrialProtocol object and their data types:currentStatus string participationType string treatmentFlag string leadOrganizationId string NIHAdminCode string title string id long PDQIdentifier string documentNumber string leadOrganizationName string phase string PIName string currentStatusDate dateTime End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of ClinicalTrialProtocol
The following are all the objects that are associated with the ClinicalTrialProtocol:Agent: One to many assoication, use getAgentCollection to get a collection of associated Agent. ProtocolAssociation: One to many assoication, use getProtocolAssociationCollection to get a collection of associated ProtocolAssociation. DiseaseOntology: One to many assoication, use getDiseaseOntologyCollection to get a collection of associated DiseaseOntology. Histopathology: One to many assoication, use getHistopathologyCollection to get a collection of associated Histopathology. End Associations and related methods
ProtocolAssociation
CaCORE::CaBIO::ProtocolAssociation - Perl extension for ProtocolAssociation.
Abstract
The CaCORE::CaBIO::bean::ProtocolAssociation is a Perl object representation of the caBIO generic object.
Description
An association class relating between Clinical Trial Protocols to Diseases.
Attributes of ProtocolAssociation
The following are all the attributes of the ProtocolAssociation object and their data types:diseaseSubCategory string CTEPNAME string IMTCODE long id long diseaseCategory string End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of ProtocolAssociation
The following are all the objects that are associated with the ProtocolAssociation:DiseaseOntology: Many to one assoication, use getDiseaseOntology to get the associated DiseaseOntology. ClinicalTrialProtocol: Many to one assoication, use getClinicalTrialProtocol to get the associated ClinicalTrialProtocol. End Associations and related methods
Pathway
CaCORE::CaBIO::Pathway - Perl extension for Pathway.
Abstract
The CaCORE::CaBIO::bean::Pathway is a Perl object representation of the caBIO generic object.
Description
An object representation of a molecular/cellular pathway compiled by BioCarta. Pathways are associated with specific Taxon objects, and contain multiple Gene objects, which may be Targets for treatment.
Attributes of Pathway
The following are all the attributes of the Pathway object and their data types:description string diagram string name string id long displayValue string End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Pathway
The following are all the objects that are associated with the Pathway:Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene. Histopathology: One to many assoication, use getHistopathologyCollection to get a collection of associated Histopathology. Taxon: Many to one assoication, use getTaxon to get the associated Taxon. End Associations and related methods
OrganOntology
CaCORE::CaBIO::OrganOntology - Perl extension for OrganOntology.
Abstract
The CaCORE::CaBIO::bean::OrganOntology is a Perl object representation of the caBIO generic object.
Description
A representation of an organ whose name occurs in a controlled vocabulary; provides access to any Histopathology objects for the organ, and, because it is $quot;ontolog-able,$quot; provides access to its ancestral and descendant terms in the vocabulary.
Attributes of OrganOntology
The following are all the attributes of the OrganOntology object and their data types:name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of OrganOntology
The following are all the objects that are associated with the OrganOntology:ParentOrganOntologyRelationship: One to many assoication, use getParentOrganOntologyRelationshipCollection to get a collection of associated ParentOrganOntologyRelationship. Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene. ExpressionFeature: One to many assoication, use getExpressionFeatureCollection to get a collection of associated ExpressionFeature. Histopathology: One to many assoication, use getHistopathologyCollection to get a collection of associated Histopathology. ChildOrganOntologyRelationship: One to many assoication, use getChildOrganOntologyRelationshipCollection to get a collection of associated ChildOrganOntologyRelationship. Anomaly: One to many assoication, use getAnomalyCollection to get a collection of associated Anomaly. End Associations and related methods
OrganOntologyRelationship
CaCORE::CaBIO::OrganOntologyRelationship - Perl extension for OrganOntologyRelationship.
Abstract
The CaCORE::CaBIO::bean::OrganOntologyRelationship is a Perl object representation of the caBIO generic object.
Description
Organ relationship object describes relationships among organs.
Attributes of OrganOntologyRelationship
The following are all the attributes of the OrganOntologyRelationship object and their data types:type string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of OrganOntologyRelationship
The following are all the objects that are associated with the OrganOntologyRelationship:ChildOrganOntology: Many to one assoication, use getChildOrganOntology to get the associated ChildOrganOntology. ParentOrganOntology: Many to one assoication, use getParentOrganOntology to get the associated ParentOrganOntology. End Associations and related methods
Histopathology
CaCORE::CaBIO::Histopathology - Perl extension for Histopathology.
Abstract
The CaCORE::CaBIO::bean::Histopathology is a Perl object representation of the caBIO generic object.
Description
An object representing anatomical changes in a diseased tissue sample associated with an expression experiment; captures the relationship between organ and disease.
Attributes of Histopathology
The following are all the attributes of the Histopathology object and their data types:comments string relationalOperation string tumorIncidenceRate float ageOfOnset string id long microscopicDescription string grossDescription string survivalInfo string End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Histopathology
The following are all the objects that are associated with the Histopathology:Metastasis: One to many assoication, use getMetastasisCollection to get a collection of associated Metastasis. Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene. Library: One to many assoication, use getLibraryCollection to get a collection of associated Library. DiseaseOntology: Many to one assoication, use getDiseaseOntology to get the associated DiseaseOntology. OrganOntology: Many to one assoication, use getOrganOntology to get the associated OrganOntology. ClinicalTrialProtocol: One to many assoication, use getClinicalTrialProtocolCollection to get a collection of associated ClinicalTrialProtocol. Anomaly: One to many assoication, use getAnomalyCollection to get a collection of associated Anomaly. End Associations and related methods
GeneOntology
CaCORE::CaBIO::GeneOntology - Perl extension for GeneOntology.
Abstract
The CaCORE::CaBIO::bean::GeneOntology is a Perl object representation of the caBIO generic object.
Description
An object providing entry to a Gene object's position in the Gene Ontology Consortium's controlled vocabularies, as recorded by LocusLink; provides access to gene objects corresponding to the ontological term, as well as to ancestor and descendant terms in the ontology tree.
Attributes of GeneOntology
The following are all the attributes of the GeneOntology object and their data types:name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of GeneOntology
The following are all the objects that are associated with the GeneOntology:ChildGeneOntologyRelationship: One to many assoication, use getChildGeneOntologyRelationshipCollection to get a collection of associated ChildGeneOntologyRelationship. Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene. ParentGeneOntologyRelationship: One to many assoication, use getParentGeneOntologyRelationshipCollection to get a collection of associated ParentGeneOntologyRelationship. End Associations and related methods
GeneOntologyRelationship
CaCORE::CaBIO::GeneOntologyRelationship - Perl extension for GeneOntologyRelationship.
Abstract
The CaCORE::CaBIO::bean::GeneOntologyRelationship is a Perl object representation of the caBIO generic object.
Description
This object specifies GoOntologyrRelationship.
Attributes of GeneOntologyRelationship
The following are all the attributes of the GeneOntologyRelationship object and their data types:relationshipType string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of GeneOntologyRelationship
The following are all the objects that are associated with the GeneOntologyRelationship:ParentGeneOntology: Many to one assoication, use getParentGeneOntology to get the associated ParentGeneOntology. ChildGeneOntology: Many to one assoication, use getChildGeneOntology to get the associated ChildGeneOntology. End Associations and related methods
DiseaseOntologyRelationship
CaCORE::CaBIO::DiseaseOntologyRelationship - Perl extension for DiseaseOntologyRelationship.
Abstract
The CaCORE::CaBIO::bean::DiseaseOntologyRelationship is a Perl object representation of the caBIO generic object.
Description
The diseaser relationship specifies the relationship among diseases.
Attributes of DiseaseOntologyRelationship
The following are all the attributes of the DiseaseOntologyRelationship object and their data types:type string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of DiseaseOntologyRelationship
The following are all the objects that are associated with the DiseaseOntologyRelationship:ChildDiseaseOntology: Many to one assoication, use getChildDiseaseOntology to get the associated ChildDiseaseOntology. ParentDiseaseOntology: Many to one assoication, use getParentDiseaseOntology to get the associated ParentDiseaseOntology. End Associations and related methods
Anomaly
CaCORE::CaBIO::Anomaly - Perl extension for Anomaly.
Abstract
The CaCORE::CaBIO::bean::Anomaly is a Perl object representation of the caBIO generic object.
Description
An irregularity in either the expression of a gene or its structure (i.e., a mutation).
Attributes of Anomaly
The following are all the attributes of the Anomaly object and their data types:description string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Anomaly
The following are all the objects that are associated with the Anomaly:OrganOntology: One to many assoication, use getOrganOntologyCollection to get a collection of associated OrganOntology. Histopathology: Many to one assoication, use getHistopathology to get the associated Histopathology. Vocabulary: One to many assoication, use getVocabularyCollection to get a collection of associated Vocabulary. End Associations and related methods
PopulationFrequency
CaCORE::CaBIO::PopulationFrequency - Perl extension for PopulationFrequency.
Abstract
The CaCORE::CaBIO::bean::PopulationFrequency is a Perl object representation of the caBIO generic object.
Description
Attributes of PopulationFrequency
The following are all the attributes of the PopulationFrequency object and their data types:majorFrequency double type string minorAllele string ethnicity string minorFrequency double majorAllele string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of PopulationFrequency
The following are all the objects that are associated with the PopulationFrequency:SNP: Many to one assoication, use getSNP to get the associated SNP. End Associations and related methods
ProteinSequence
CaCORE::CaBIO::ProteinSequence - Perl extension for ProteinSequence.
Abstract
The CaCORE::CaBIO::bean::ProteinSequence is a Perl object representation of the caBIO generic object.
Description
Attributes of ProteinSequence
The following are all the attributes of the ProteinSequence object and their data types:checkSum string value string molecularWeightInDaltons double length long id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of ProteinSequence
The following are all the objects that are associated with the ProteinSequence:Protein: Many to one assoication, use getProtein to get the associated Protein. End Associations and related methods
Protein
CaCORE::CaBIO::Protein - Perl extension for Protein.
Abstract
The CaCORE::CaBIO::bean::Protein is a Perl object representation of the caBIO generic object.
Description
Attributes of Protein
The following are all the attributes of the Protein object and their data types:copyrightStatement string primaryAccession string name string uniProtCode string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Protein
The following are all the objects that are associated with the Protein:Taxon: One to many assoication, use getTaxonCollection to get a collection of associated Taxon. Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene. SecondaryAccession: One to many assoication, use getSecondaryAccessionCollection to get a collection of associated SecondaryAccession. Keywords: One to many assoication, use getKeywordsCollection to get a collection of associated Keywords. ProteinSequence: Many to one assoication, use getProteinSequence to get the associated ProteinSequence. ProteinAlias: One to many assoication, use getProteinAliasCollection to get a collection of associated ProteinAlias. End Associations and related methods
ProteinAlias
CaCORE::CaBIO::ProteinAlias - Perl extension for ProteinAlias.
Abstract
The CaCORE::CaBIO::bean::ProteinAlias is a Perl object representation of the caBIO generic object.
Description
Attributes of ProteinAlias
The following are all the attributes of the ProteinAlias object and their data types:name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of ProteinAlias
The following are all the objects that are associated with the ProteinAlias:Protein: One to many assoication, use getProteinCollection to get a collection of associated Protein. End Associations and related methods
HomologousAssociation
CaCORE::CaBIO::HomologousAssociation - Perl extension for HomologousAssociation.
Abstract
The CaCORE::CaBIO::bean::HomologousAssociation is a Perl object representation of the caBIO generic object.
Description
Attributes of HomologousAssociation
The following are all the attributes of the HomologousAssociation object and their data types:similarityPercentage float homologousId long id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of HomologousAssociation
The following are all the objects that are associated with the HomologousAssociation:HomologousGene: Many to one assoication, use getHomologousGene to get the associated HomologousGene. End Associations and related methods
PhysicalLocation
CaCORE::CaBIO::PhysicalLocation - Perl extension for PhysicalLocation.
Abstract
The CaCORE::CaBIO::bean::PhysicalLocation is a Perl object representation of the caBIO generic object.
Description
Attributes of PhysicalLocation
The following are all the attributes of the PhysicalLocation object and their data types:chromosomalStartPosition long chromosomalEndPosition long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of PhysicalLocation
The following are all the objects that are associated with the PhysicalLocation:Cytoband: One to many assoication, use getCytobandCollection to get a collection of associated Cytoband. End Associations and related methods
Cytoband
CaCORE::CaBIO::Cytoband - Perl extension for Cytoband.
Abstract
The CaCORE::CaBIO::bean::Cytoband is a Perl object representation of the caBIO generic object.
Description
Attributes of Cytoband
The following are all the attributes of the Cytoband object and their data types:name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Cytoband
The following are all the objects that are associated with the Cytoband:PhysicalLocation: Many to one assoication, use getPhysicalLocation to get the associated PhysicalLocation. End Associations and related methods
CytogeneticLocation
CaCORE::CaBIO::CytogeneticLocation - Perl extension for CytogeneticLocation.
Abstract
The CaCORE::CaBIO::bean::CytogeneticLocation is a Perl object representation of the caBIO generic object.
Description
Attributes of CytogeneticLocation
The following are all the attributes of the CytogeneticLocation object and their data types:End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of CytogeneticLocation
The following are all the objects that are associated with the CytogeneticLocation:StartCytoband: Many to one assoication, use getStartCytoband to get the associated StartCytoband. EndCytoband: Many to one assoication, use getEndCytoband to get the associated EndCytoband. End Associations and related methods
GeneRelativeLocation
CaCORE::CaBIO::GeneRelativeLocation - Perl extension for GeneRelativeLocation.
Abstract
The CaCORE::CaBIO::bean::GeneRelativeLocation is a Perl object representation of the caBIO generic object.
Description
Attributes of GeneRelativeLocation
The following are all the attributes of the GeneRelativeLocation object and their data types:type string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of GeneRelativeLocation
The following are all the objects that are associated with the GeneRelativeLocation:End Associations and related methods
GenericReporter
CaCORE::CaBIO::GenericReporter - Perl extension for GenericReporter.
Abstract
The CaCORE::CaBIO::bean::GenericReporter is a Perl object representation of the caBIO generic object.
Description
Attributes of GenericReporter
The following are all the attributes of the GenericReporter object and their data types:name string type string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of GenericReporter
The following are all the objects that are associated with the GenericReporter:GenericArray: One to many assoication, use getGenericArrayCollection to get a collection of associated GenericArray. End Associations and related methods
GenericArray
CaCORE::CaBIO::GenericArray - Perl extension for GenericArray.
Abstract
The CaCORE::CaBIO::bean::GenericArray is a Perl object representation of the caBIO generic object.
Description
Attributes of GenericArray
The following are all the attributes of the GenericArray object and their data types:arrayName string platform string type string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of GenericArray
The following are all the objects that are associated with the GenericArray:GenericReporter: One to many assoication, use getGenericReporterCollection to get a collection of associated GenericReporter. End Associations and related methods