CaCORE::CaMOD::ApprovalStatus - Perl extension for ApprovalStatus.
The CaCORE::CaMOD::bean::ApprovalStatus is a Perl object representation of the caBIO generic object.
The following are all the attributes of the ApprovalStatus object and their data types:
name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the ApprovalStatus:
End Associations and related methods
Availability
CaCORE::CaMOD::Availability - Perl extension for Availability.
Abstract
The CaCORE::CaMOD::bean::Availability is a Perl object representation of the caBIO generic object.
Description
Dates on which a animal model record was entered, modified or release to the intended viewing audience.
Attributes of Availability
The following are all the attributes of the Availability object and their data types:enteredDate dateTime visibleTo string id long releaseDate dateTime modifiedDate dateTime End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Availability
The following are all the objects that are associated with the Availability:End Associations and related methods
AbstractCancerModel
CaCORE::CaMOD::AbstractCancerModel - Perl extension for AbstractCancerModel.
Abstract
The CaCORE::CaMOD::bean::AbstractCancerModel is a Perl object representation of the caBIO generic object.
Description
Attributes of AbstractCancerModel
The following are all the attributes of the AbstractCancerModel object and their data types:experimentDesign string modelDescriptor string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of AbstractCancerModel
The following are all the objects that are associated with the AbstractCancerModel:ApprovalStatus: Many to one assoication, use getApprovalStatus to get the associated ApprovalStatus. Availability: Many to one assoication, use getAvailability to get the associated Availability. PartyRole: One to many assoication, use getPartyRoleCollection to get a collection of associated PartyRole. Publication: One to many assoication, use getPublicationCollection to get a collection of associated Publication. End Associations and related methods
TumorCode
CaCORE::CaMOD::TumorCode - Perl extension for TumorCode.
Abstract
The CaCORE::CaMOD::bean::TumorCode is a Perl object representation of the caBIO generic object.
Description
A tumor code captures the tumor type and origin species used for a drug screen test.
Attributes of TumorCode
The following are all the attributes of the TumorCode object and their data types:code string description string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of TumorCode
The following are all the objects that are associated with the TumorCode:End Associations and related methods
Xenograft
CaCORE::CaMOD::Xenograft - Perl extension for Xenograft.
Abstract
The CaCORE::CaMOD::bean::Xenograft is a Perl object representation of the caBIO generic object.
Description
This object describes to xenografts (implanting tissue or cell lines from a different species) and allografts (implanting tissue or cell lines form the same species). The grafts are transplanted in immuno-compromised animals where they grow and, depending on the graft material, form tumors.
Attributes of Xenograft
The following are all the attributes of the Xenograft object and their data types:geneticManipulation string administrativeSite string type string parentalCellLineName string modificationDescription string name string End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Xenograft
The following are all the objects that are associated with the Xenograft:InvivoResult: One to many assoication, use getInvivoResultCollection to get a collection of associated InvivoResult. TumorCode: Many to one assoication, use getTumorCode to get the associated TumorCode. OriginTaxon: Many to one assoication, use getOriginTaxon to get the associated OriginTaxon. HostTaxon: Many to one assoication, use getHostTaxon to get the associated HostTaxon. End Associations and related methods
TreatmentSchedule
CaCORE::CaMOD::TreatmentSchedule - Perl extension for TreatmentSchedule.
Abstract
The CaCORE::CaMOD::bean::TreatmentSchedule is a Perl object representation of the caBIO generic object.
Description
Treatment schedule for the pre-clinical trial / therapeutic experiment describing the dosages of the drug and the times of the treatment.
Attributes of TreatmentSchedule
The following are all the attributes of the TreatmentSchedule object and their data types:regimen string dosage string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of TreatmentSchedule
The following are all the objects that are associated with the TreatmentSchedule:End Associations and related methods
Nomenclature
CaCORE::CaMOD::Nomenclature - Perl extension for Nomenclature.
Abstract
The CaCORE::CaMOD::bean::Nomenclature is a Perl object representation of the caBIO generic object.
Description
Official nomenclature name for mouse and rat models.
Attributes of Nomenclature
The following are all the attributes of the Nomenclature object and their data types:name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Nomenclature
The following are all the objects that are associated with the Nomenclature:End Associations and related methods
GenotypeSummary
CaCORE::CaMOD::GenotypeSummary - Perl extension for GenotypeSummary.
Abstract
The CaCORE::CaMOD::bean::GenotypeSummary is a Perl object representation of the caBIO generic object.
Description
Listing of the genetic changes made deliberately in order to generate the animal model.
Attributes of GenotypeSummary
The following are all the attributes of the GenotypeSummary object and their data types:summary string genotype string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of GenotypeSummary
The following are all the objects that are associated with the GenotypeSummary:Nomenclature: Many to one assoication, use getNomenclature to get the associated Nomenclature. End Associations and related methods
Conditionality
CaCORE::CaMOD::Conditionality - Perl extension for Conditionality.
Abstract
The CaCORE::CaMOD::bean::Conditionality is a Perl object representation of the caBIO generic object.
Description
Indicates if a transgene or targeted modification is done conditionally (time or tissue specific).
Attributes of Conditionality
The following are all the attributes of the Conditionality object and their data types:description string conditionedBy string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Conditionality
The following are all the objects that are associated with the Conditionality:End Associations and related methods
Image
CaCORE::CaMOD::Image - Perl extension for Image.
Abstract
The CaCORE::CaMOD::bean::Image is a Perl object representation of the caBIO generic object.
Description
Images related to the animal model e.g. histology images, blots, and graphics.
Attributes of Image
The following are all the attributes of the Image object and their data types:description string title string id long staining string End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Image
The following are all the objects that are associated with the Image:Availability: Many to one assoication, use getAvailability to get the associated Availability. End Associations and related methods
EngineeredGene
CaCORE::CaMOD::EngineeredGene - Perl extension for EngineeredGene.
Abstract
The CaCORE::CaMOD::bean::EngineeredGene is a Perl object representation of the caBIO generic object.
Description
Manipulated Gene introduced in the animal model.
Attributes of EngineeredGene
The following are all the attributes of the EngineeredGene object and their data types:cabioId long name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of EngineeredGene
The following are all the objects that are associated with the EngineeredGene:Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene. DatabaseCrossReference: One to many assoication, use getDatabaseCrossReferenceCollection to get a collection of associated DatabaseCrossReference. GenotypeSummary: Many to one assoication, use getGenotypeSummary to get the associated GenotypeSummary. ExpressionFeature: One to many assoication, use getExpressionFeatureCollection to get a collection of associated ExpressionFeature. Conditionality: Many to one assoication, use getConditionality to get the associated Conditionality. Image: Many to one assoication, use getImage to get the associated Image. End Associations and related methods
IntegrationType
CaCORE::CaMOD::IntegrationType - Perl extension for IntegrationType.
Abstract
The CaCORE::CaMOD::bean::IntegrationType is a Perl object representation of the caBIO generic object.
Description
Location of the integration of the engineered gene e.g. random or targeted.
Attributes of IntegrationType
The following are all the attributes of the IntegrationType object and their data types:name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of IntegrationType
The following are all the objects that are associated with the IntegrationType:GenomicSegment: One to many assoication, use getGenomicSegmentCollection to get a collection of associated GenomicSegment. Transgene: One to many assoication, use getTransgeneCollection to get a collection of associated Transgene. End Associations and related methods
Transgene
CaCORE::CaMOD::Transgene - Perl extension for Transgene.
Abstract
The CaCORE::CaMOD::bean::Transgene is a Perl object representation of the caBIO generic object.
Description
A transgene is an engineered gene consisting at least of a regulatory element and a coding sequence; regulatory element and coding sequence can come from different species.
Attributes of Transgene
The following are all the attributes of the Transgene object and their data types:locationOfIntegration string engineeredGeneId long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Transgene
The following are all the objects that are associated with the Transgene:RegulatoryElement: One to many assoication, use getRegulatoryElementCollection to get a collection of associated RegulatoryElement. IntegrationType: Many to one assoication, use getIntegrationType to get the associated IntegrationType. End Associations and related methods
Therapy
CaCORE::CaMOD::Therapy - Perl extension for Therapy.
Abstract
The CaCORE::CaMOD::bean::Therapy is a Perl object representation of the caBIO generic object.
Description
Pre-clinical trials experiment conducted on the animal model with the goal to reduce cancer burden.
Attributes of Therapy
The following are all the attributes of the Therapy object and their data types:experiment string comments string id long results string End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Therapy
The following are all the objects that are associated with the Therapy:TreatmentSchedule: Many to one assoication, use getTreatmentSchedule to get the associated TreatmentSchedule. Agent: Many to one assoication, use getAgent to get the associated Agent. Publication: One to many assoication, use getPublicationCollection to get a collection of associated Publication. End Associations and related methods
YeastModel
CaCORE::CaMOD::YeastModel - Perl extension for YeastModel.
Abstract
The CaCORE::CaMOD::bean::YeastModel is a Perl object representation of the caBIO generic object.
Description
A yeast model captures the yeast strains altered in the NCI Yeast Anticancer Drug Screen.
Attributes of YeastModel
The following are all the attributes of the YeastModel object and their data types:End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of YeastModel
The following are all the objects that are associated with the YeastModel:TargetedModification: One to many assoication, use getTargetedModificationCollection to get a collection of associated TargetedModification. ScreeningResult: One to many assoication, use getScreeningResultCollection to get a collection of associated ScreeningResult. End Associations and related methods
TargetedModification
CaCORE::CaMOD::TargetedModification - Perl extension for TargetedModification.
Abstract
The CaCORE::CaMOD::bean::TargetedModification is a Perl object representation of the caBIO generic object.
Description
Modification targeted to a specific gene or a specific part of the gene to either suppress the function of the gene or insert marker sequences like loxP sites.
Attributes of TargetedModification
The following are all the attributes of the TargetedModification object and their data types:esCellLineName string blastocystName string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of TargetedModification
The following are all the objects that are associated with the TargetedModification:ModificationType: One to many assoication, use getModificationTypeCollection to get a collection of associated ModificationType. YeastModel: Many to one assoication, use getYeastModel to get the associated YeastModel. EngineeredGene: Many to one assoication, use getEngineeredGene to get the associated EngineeredGene. End Associations and related methods
SexDistribution
CaCORE::CaMOD::SexDistribution - Perl extension for SexDistribution.
Abstract
The CaCORE::CaMOD::bean::SexDistribution is a Perl object representation of the caBIO generic object.
Description
Object indicated if the phenotype was observed in both sexes or only in one.
Attributes of SexDistribution
The following are all the attributes of the SexDistribution object and their data types:type string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of SexDistribution
The following are all the objects that are associated with the SexDistribution:End Associations and related methods
SegmentType
CaCORE::CaMOD::SegmentType - Perl extension for SegmentType.
Abstract
The CaCORE::CaMOD::bean::SegmentType is a Perl object representation of the caBIO generic object.
Description
specifies the type of library that the genomic segment was retrieved from such as BAC or YAC.
Attributes of SegmentType
The following are all the attributes of the SegmentType object and their data types:name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of SegmentType
The following are all the objects that are associated with the SegmentType:End Associations and related methods
Role
CaCORE::CaMOD::Role - Perl extension for Role.
Abstract
The CaCORE::CaMOD::bean::Role is a Perl object representation of the caBIO generic object.
Description
Role that a person or organization plays e.g. public user, reviewer.
Attributes of Role
The following are all the attributes of the Role object and their data types:name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Role
The following are all the objects that are associated with the Role:PartyRole: One to many assoication, use getPartyRoleCollection to get a collection of associated PartyRole. End Associations and related methods
RepositoryInfo
CaCORE::CaMOD::RepositoryInfo - Perl extension for RepositoryInfo.
Abstract
The CaCORE::CaMOD::bean::RepositoryInfo is a Perl object representation of the caBIO generic object.
Description
Some animal models are distributed by the MMHCC mouse repository. Object contains information about the availability of a particular model from the repository. A submitter of data to the cancer models database can also indicate if their model should be submitted to the repository.
Attributes of RepositoryInfo
The following are all the attributes of the RepositoryInfo object and their data types:inTheRepository long sentEmailContent string id long suggestSubmission long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of RepositoryInfo
The following are all the objects that are associated with the RepositoryInfo:End Associations and related methods
RegulatoryElementType
CaCORE::CaMOD::RegulatoryElementType - Perl extension for RegulatoryElementType.
Abstract
The CaCORE::CaMOD::bean::RegulatoryElementType is a Perl object representation of the caBIO generic object.
Description
Type of the regulatory element e.g. promoter, polyA signal.
Attributes of RegulatoryElementType
The following are all the attributes of the RegulatoryElementType object and their data types:name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of RegulatoryElementType
The following are all the objects that are associated with the RegulatoryElementType:End Associations and related methods
RegulatoryElement
CaCORE::CaMOD::RegulatoryElement - Perl extension for RegulatoryElement.
Abstract
The CaCORE::CaMOD::bean::RegulatoryElement is a Perl object representation of the caBIO generic object.
Description
A regulatory element controls the expression of a gene and/or and engineered gene.
Attributes of RegulatoryElement
The following are all the attributes of the RegulatoryElement object and their data types:name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of RegulatoryElement
The following are all the objects that are associated with the RegulatoryElement:Promoter: One to many assoication, use getPromoterCollection to get a collection of associated Promoter. Taxon: Many to one assoication, use getTaxon to get the associated Taxon. RegulatoryElementType: Many to one assoication, use getRegulatoryElementType to get the associated RegulatoryElementType. End Associations and related methods
PublicationStatus
CaCORE::CaMOD::PublicationStatus - Perl extension for PublicationStatus.
Abstract
The CaCORE::CaMOD::bean::PublicationStatus is a Perl object representation of the caBIO generic object.
Description
Status of the publication e.g. published, submitted.
Attributes of PublicationStatus
The following are all the attributes of the PublicationStatus object and their data types:name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of PublicationStatus
The following are all the objects that are associated with the PublicationStatus:End Associations and related methods
Publication
CaCORE::CaMOD::Publication - Perl extension for Publication.
Abstract
The CaCORE::CaMOD::bean::Publication is a Perl object representation of the caBIO generic object.
Description
Publications describing the animal model itself or experiments in which the animal model was used.
Attributes of Publication
The following are all the attributes of the Publication object and their data types:volume string endPage long year long title string pmid long startPage long journal string authors string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Publication
The following are all the objects that are associated with the Publication:PublicationStatus: Many to one assoication, use getPublicationStatus to get the associated PublicationStatus. End Associations and related methods
Promoter
CaCORE::CaMOD::Promoter - Perl extension for Promoter.
Abstract
The CaCORE::CaMOD::bean::Promoter is a Perl object representation of the caBIO generic object.
Description
Promoter is a subcategory of the regulatory element.
Attributes of Promoter
The following are all the attributes of the Promoter object and their data types:id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Promoter
The following are all the objects that are associated with the Promoter:Gene: Many to one assoication, use getGene to get the associated Gene. RegulatoryElement: Many to one assoication, use getRegulatoryElement to get the associated RegulatoryElement. End Associations and related methods
Phenotype
CaCORE::CaMOD::Phenotype - Perl extension for Phenotype.
Abstract
The CaCORE::CaMOD::bean::Phenotype is a Perl object representation of the caBIO generic object.
Description
Phenotype displayed by the animal model such as neoplastic lesions, other diseases, behavioral problem.
Attributes of Phenotype
The following are all the attributes of the Phenotype object and their data types:description string breedingNotes string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Phenotype
The following are all the objects that are associated with the Phenotype:SexDistribution: Many to one assoication, use getSexDistribution to get the associated SexDistribution. End Associations and related methods
Party
CaCORE::CaMOD::Party - Perl extension for Party.
Abstract
The CaCORE::CaMOD::bean::Party is a Perl object representation of the caBIO generic object.
Description
Entity that has access to the data, either a person or an organization.
Attributes of Party
The following are all the attributes of the Party object and their data types:id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Party
The following are all the objects that are associated with the Party:PartyRole: One to many assoication, use getPartyRoleCollection to get a collection of associated PartyRole. ContactInfo: One to many assoication, use getContactInfoCollection to get a collection of associated ContactInfo. End Associations and related methods
Person
CaCORE::CaMOD::Person - Perl extension for Person.
Abstract
The CaCORE::CaMOD::bean::Person is a Perl object representation of the caBIO generic object.
Description
Person's first and last name and the connection to the party.
Attributes of Person
The following are all the attributes of the Person object and their data types:partyId long firstName string lastName string End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Person
The following are all the objects that are associated with the Person:End Associations and related methods
PartyRole
CaCORE::CaMOD::PartyRole - Perl extension for PartyRole.
Abstract
The CaCORE::CaMOD::bean::PartyRole is a Perl object representation of the caBIO generic object.
Description
Object connects the party (organization or person) with the animal model.
Attributes of PartyRole
The following are all the attributes of the PartyRole object and their data types:id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of PartyRole
The following are all the objects that are associated with the PartyRole:Role: Many to one assoication, use getRole to get the associated Role. AnimalModel: One to many assoication, use getAnimalModelCollection to get a collection of associated AnimalModel. Party: Many to one assoication, use getParty to get the associated Party. End Associations and related methods
Organization
CaCORE::CaMOD::Organization - Perl extension for Organization.
Abstract
The CaCORE::CaMOD::bean::Organization is a Perl object representation of the caBIO generic object.
Description
Organizational unit like a laboratory, institute or consortium.
Attributes of Organization
The following are all the attributes of the Organization object and their data types:partyId long name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of Organization
The following are all the objects that are associated with the Organization:End Associations and related methods
MicroArrayData
CaCORE::CaMOD::MicroArrayData - Perl extension for MicroArrayData.
Abstract
The CaCORE::CaMOD::bean::MicroArrayData is a Perl object representation of the caBIO generic object.
Description
Data of microarray experiments generated from the animal model.
Attributes of MicroArrayData
The following are all the attributes of the MicroArrayData object and their data types:experimentName string id long experimentId long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of MicroArrayData
The following are all the objects that are associated with the MicroArrayData:Availability: Many to one assoication, use getAvailability to get the associated Availability. End Associations and related methods
JaxInfo
CaCORE::CaMOD::JaxInfo - Perl extension for JaxInfo.
Abstract
The CaCORE::CaMOD::bean::JaxInfo is a Perl object representation of the caBIO generic object.
Description
Identification number (stock number) of strain at the Jackson Laboratory, number can be used for ordering the strain; http://www.jax.org.
Attributes of JaxInfo
The following are all the attributes of the JaxInfo object and their data types:jaxStockNo long id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of JaxInfo
The following are all the objects that are associated with the JaxInfo:End Associations and related methods
EnvironmentalFactor
CaCORE::CaMOD::EnvironmentalFactor - Perl extension for EnvironmentalFactor.
Abstract
The CaCORE::CaMOD::bean::EnvironmentalFactor is a Perl object representation of the caBIO generic object.
Description
Chemical, radiation, hormone treatment or other environmental factor that initiates or supports development of neoplasias.
Attributes of EnvironmentalFactor
The following are all the attributes of the EnvironmentalFactor object and their data types:name string type string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of EnvironmentalFactor
The following are all the objects that are associated with the EnvironmentalFactor:InducedMutation: One to many assoication, use getInducedMutationCollection to get a collection of associated InducedMutation. End Associations and related methods
InducedMutation
CaCORE::CaMOD::InducedMutation - Perl extension for InducedMutation.
Abstract
The CaCORE::CaMOD::bean::InducedMutation is a Perl object representation of the caBIO generic object.
Description
Induced mutations are defined as mutations triggered by radiation, chemicals or other means. Progeny of the treated animal inherits the mutation.
Attributes of InducedMutation
The following are all the attributes of the InducedMutation object and their data types:id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of InducedMutation
The following are all the objects that are associated with the InducedMutation:EnvironmentalFactor: Many to one assoication, use getEnvironmentalFactor to get the associated EnvironmentalFactor. EngineeredGene: One to many assoication, use getEngineeredGeneCollection to get a collection of associated EngineeredGene. End Associations and related methods
GenomicSegment
CaCORE::CaMOD::GenomicSegment - Perl extension for GenomicSegment.
Abstract
The CaCORE::CaMOD::bean::GenomicSegment is a Perl object representation of the caBIO generic object.
Description
Genomic segment extracted from a library e.g. BAC or YAC library to be used in the genetic manipulation of the animal model.
Attributes of GenomicSegment
The following are all the attributes of the GenomicSegment object and their data types:locationOfIntegration string segmentSize string id long cloneDesignator string End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of GenomicSegment
The following are all the objects that are associated with the GenomicSegment:SegmentType: Many to one assoication, use getSegmentType to get the associated SegmentType. EngineeredGene: One to many assoication, use getEngineeredGeneCollection to get a collection of associated EngineeredGene. End Associations and related methods
GeneticAlteration
CaCORE::CaMOD::GeneticAlteration - Perl extension for GeneticAlteration.
Abstract
The CaCORE::CaMOD::bean::GeneticAlteration is a Perl object representation of the caBIO generic object.
Description
Genetic alterations found in the neoplastic lesions of the animal model. These alterations are not made intentionally.
Attributes of GeneticAlteration
The following are all the attributes of the GeneticAlteration object and their data types:observation string methodOfObservation string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of GeneticAlteration
The following are all the objects that are associated with the GeneticAlteration:End Associations and related methods
GeneFunction
CaCORE::CaMOD::GeneFunction - Perl extension for GeneFunction.
Abstract
The CaCORE::CaMOD::bean::GeneFunction is a Perl object representation of the caBIO generic object.
Description
Functions of the engineered genes.
Attributes of GeneFunction
The following are all the attributes of the GeneFunction object and their data types:function string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of GeneFunction
The following are all the objects that are associated with the GeneFunction:EngineeredGene: Many to one assoication, use getEngineeredGene to get the associated EngineeredGene. End Associations and related methods
GeneDelivery
CaCORE::CaMOD::GeneDelivery - Perl extension for GeneDelivery.
Abstract
The CaCORE::CaMOD::bean::GeneDelivery is a Perl object representation of the caBIO generic object.
Description
Gene is delivered to specific organs or specific receptors within the animal model. using viral vectors
Attributes of GeneDelivery
The following are all the attributes of the GeneDelivery object and their data types:viralVector string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of GeneDelivery
The following are all the objects that are associated with the GeneDelivery:EngineeredGene: Many to one assoication, use getEngineeredGene to get the associated EngineeredGene. End Associations and related methods
ContactInfo
CaCORE::CaMOD::ContactInfo - Perl extension for ContactInfo.
Abstract
The CaCORE::CaMOD::bean::ContactInfo is a Perl object representation of the caBIO generic object.
Description
Information regarding the person who submitted the data.
Attributes of ContactInfo
The following are all the attributes of the ContactInfo object and their data types:faxNumber string zipCode string street string institute string state string email string phoneNumber string labName string id long city string End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of ContactInfo
The following are all the objects that are associated with the ContactInfo:Party: One to many assoication, use getPartyCollection to get a collection of associated Party. End Associations and related methods
CellLine
CaCORE::CaMOD::CellLine - Perl extension for CellLine.
Abstract
The CaCORE::CaMOD::bean::CellLine is a Perl object representation of the caBIO generic object.
Description
Cell lines generated from the animal model.
Attributes of CellLine
The following are all the attributes of the CellLine object and their data types:experiment string comments string name string results string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of CellLine
The following are all the objects that are associated with the CellLine:Publication: One to many assoication, use getPublicationCollection to get a collection of associated Publication. End Associations and related methods
CarcinogenicIntervention
CaCORE::CaMOD::CarcinogenicIntervention - Perl extension for CarcinogenicIntervention.
Abstract
The CaCORE::CaMOD::bean::CarcinogenicIntervention is a Perl object representation of the caBIO generic object.
Description
Treatment or procedure that the animal model was exposed to in order to initiate or support the development of neoplastic lesions.
Attributes of CarcinogenicIntervention
The following are all the attributes of the CarcinogenicIntervention object and their data types:id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of CarcinogenicIntervention
The following are all the objects that are associated with the CarcinogenicIntervention:EnvironmentalFactor: Many to one assoication, use getEnvironmentalFactor to get the associated EnvironmentalFactor. TreatmentSchedule: Many to one assoication, use getTreatmentSchedule to get the associated TreatmentSchedule. End Associations and related methods
AnimalModel
CaCORE::CaMOD::AnimalModel - Perl extension for AnimalModel.
Abstract
The CaCORE::CaMOD::bean::AnimalModel is a Perl object representation of the caBIO generic object.
Description
An animal model which develops cancer or can be used to generate a model that develops cancer.
Attributes of AnimalModel
The following are all the attributes of the AnimalModel object and their data types:url string End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of AnimalModel
The following are all the objects that are associated with the AnimalModel:Phenotype: Many to one assoication, use getPhenotype to get the associated Phenotype. CarcinogenicIntervention: One to many assoication, use getCarcinogenicInterventionCollection to get a collection of associated CarcinogenicIntervention. Therapy: One to many assoication, use getTherapyCollection to get a collection of associated Therapy. Image: One to many assoication, use getImageCollection to get a collection of associated Image. Xenograft: One to many assoication, use getXenograftCollection to get a collection of associated Xenograft. MicroArrayData: One to many assoication, use getMicroArrayDataCollection to get a collection of associated MicroArrayData. TargetedModification: One to many assoication, use getTargetedModificationCollection to get a collection of associated TargetedModification. GenomicSegment: One to many assoication, use getGenomicSegmentCollection to get a collection of associated GenomicSegment. RepositoryInfo: Many to one assoication, use getRepositoryInfo to get the associated RepositoryInfo. Histopathology: One to many assoication, use getHistopathologyCollection to get a collection of associated Histopathology. CellLine: One to many assoication, use getCellLineCollection to get a collection of associated CellLine. Transgene: One to many assoication, use getTransgeneCollection to get a collection of associated Transgene. JaxInfo: Many to one assoication, use getJaxInfo to get the associated JaxInfo. InducedMutation: One to many assoication, use getInducedMutationCollection to get a collection of associated InducedMutation. End Associations and related methods
EndpointCode
CaCORE::CaMOD::EndpointCode - Perl extension for EndpointCode.
Abstract
The CaCORE::CaMOD::bean::EndpointCode is a Perl object representation of the caBIO generic object.
Description
A endpoint code captures the parameter for measuring success of anti-drug screen test; mean tumor weightm median survival time, etc.
Attributes of EndpointCode
The following are all the attributes of the EndpointCode object and their data types:code string description string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of EndpointCode
The following are all the objects that are associated with the EndpointCode:End Associations and related methods
ScreeningResult
CaCORE::CaMOD::ScreeningResult - Perl extension for ScreeningResult.
Abstract
The CaCORE::CaMOD::bean::ScreeningResult is a Perl object representation of the caBIO generic object.
Description
A Screening Result captures the results of the tens of thousands of compounds screened for their ability to inhibit the growth of selected yeast strains altered in DNA damage repair or cell cycle control.
Attributes of ScreeningResult
The following are all the attributes of the ScreeningResult object and their data types:diffinh float aveinh float stage string id long inhibitionRate float End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of ScreeningResult
The following are all the objects that are associated with the ScreeningResult:TreatmentSchedule: Many to one assoication, use getTreatmentSchedule to get the associated TreatmentSchedule. Agent: Many to one assoication, use getAgent to get the associated Agent. End Associations and related methods
InvivoResult
CaCORE::CaMOD::InvivoResult - Perl extension for InvivoResult.
Abstract
The CaCORE::CaMOD::bean::InvivoResult is a Perl object representation of the caBIO generic object.
Description
An Invivo Result captures the results of anti-tumor drug screening.
Attributes of InvivoResult
The following are all the attributes of the InvivoResult object and their data types:toxicityEvalDay string evaluationDay string toxicitySurvivors string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of InvivoResult
The following are all the objects that are associated with the InvivoResult:TreatmentSchedule: Many to one assoication, use getTreatmentSchedule to get the associated TreatmentSchedule. Agent: Many to one assoication, use getAgent to get the associated Agent. EndpointCode: Many to one assoication, use getEndpointCode to get the associated EndpointCode. End Associations and related methods
ModificationType
CaCORE::CaMOD::ModificationType - Perl extension for ModificationType.
Abstract
The CaCORE::CaMOD::bean::ModificationType is a Perl object representation of the caBIO generic object.
Description
Attributes of ModificationType
The following are all the attributes of the ModificationType object and their data types:name string id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of ModificationType
The following are all the objects that are associated with the ModificationType:TargetedModification: One to many assoication, use getTargetedModificationCollection to get a collection of associated TargetedModification. End Associations and related methods
ExpressionFeature
CaCORE::CaMOD::ExpressionFeature - Perl extension for ExpressionFeature.
Abstract
The CaCORE::CaMOD::bean::ExpressionFeature is a Perl object representation of the caBIO generic object.
Description
The expression feature object describes expression pattern of the engineered gene in the cancer model.
Attributes of ExpressionFeature
The following are all the attributes of the ExpressionFeature object and their data types:id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of ExpressionFeature
The following are all the objects that are associated with the ExpressionFeature:OrganOntology: One to many assoication, use getOrganOntologyCollection to get a collection of associated OrganOntology. End Associations and related methods
CancerModel
CaCORE::CaMOD::CancerModel - Perl extension for CancerModel.
Abstract
The CaCORE::CaMOD::bean::CancerModel is a Perl object representation of the caBIO generic object.
Description
Attributes of CancerModel
The following are all the attributes of the CancerModel object and their data types:id long End Attributes Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
Associations of CancerModel
The following are all the objects that are associated with the CancerModel:End Associations and related methods