CaCORE::CaMOD::AbstractCancerModel - Perl extension for AbstractCancerModel.
The CaCORE::CaMOD::AbstractCancerModel is a Perl object representation of the CaCORE AbstractCancerModel object.
See the CaCORE::ApplicationService manpage.
The following are all the attributes of the AbstractCancerModel object and their data types:
data type: string
data type: long
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the AbstractCancerModel:
Many to one assoication, use getApprovalStatus
to get the associated ApprovalStatus.
Many to one assoication, use getAvailability
to get the associated Availability.
One to many assoication, use getPublicationCollection
to get a collection of associated Publication.
CaCORE::CaMOD::AnimalModel - Perl extension for AnimalModel.
The CaCORE::CaMOD::AnimalModel is a Perl object representation of the CaCORE AnimalModel object.
AnimalModel extends from domain object AbstractCancerModel.
See the CaCORE::ApplicationService manpage.
An animal model which develops cancer or can be used to generate a model that develops cancer.
The following are all the attributes of the AnimalModel object and their data types:
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the AnimalModel:
One to many assoication, use getCarcinogenicInterventionCollection
to get a collection of associated CarcinogenicIntervention.
One to many assoication, use getCellLineCollection
to get a collection of associated CellLine.
One to many assoication, use getGenomicSegmentCollection
to get a collection of associated GenomicSegment.
One to many assoication, use getHistopathologyCollection
to get a collection of associated Histopathology.
One to many assoication, use getImageCollection
to get a collection of associated Image.
One to many assoication, use getInducedMutationCollection
to get a collection of associated InducedMutation.
Many to one assoication, use getJaxInfo
to get the associated JaxInfo.
One to many assoication, use getMicroArrayDataCollection
to get a collection of associated MicroArrayData.
One to many assoication, use getPartyRoleCollection
to get a collection of associated PartyRole.
Many to one assoication, use getPhenotype
to get the associated Phenotype.
Many to one assoication, use getRepositoryInfo
to get the associated RepositoryInfo.
One to many assoication, use getTargetedModificationCollection
to get a collection of associated TargetedModification.
One to many assoication, use getTherapyCollection
to get a collection of associated Therapy.
One to many assoication, use getTransgeneCollection
to get a collection of associated Transgene.
One to many assoication, use getXenograftCollection
to get a collection of associated Xenograft.
CaCORE::CaMOD::ApprovalStatus - Perl extension for ApprovalStatus.
The CaCORE::CaMOD::ApprovalStatus is a Perl object representation of the CaCORE ApprovalStatus object.
See the CaCORE::ApplicationService manpage.
The following are all the attributes of the ApprovalStatus object and their data types:
data type: long
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the ApprovalStatus:
CaCORE::CaMOD::Availability - Perl extension for Availability.
The CaCORE::CaMOD::Availability is a Perl object representation of the CaCORE Availability object.
See the CaCORE::ApplicationService manpage.
Dates on which a animal model record was entered, modified or release to the intended viewing audience.
The following are all the attributes of the Availability object and their data types:
data type: dateTime
data type: long
data type: dateTime
data type: dateTime
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Availability:
CaCORE::CaMOD::CancerModel - Perl extension for CancerModel.
The CaCORE::CaMOD::CancerModel is a Perl object representation of the CaCORE CancerModel object.
See the CaCORE::ApplicationService manpage.
The following are all the attributes of the CancerModel object and their data types:
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the CancerModel:
CaCORE::CaMOD::CarcinogenicIntervention - Perl extension for CarcinogenicIntervention.
The CaCORE::CaMOD::CarcinogenicIntervention is a Perl object representation of the CaCORE CarcinogenicIntervention object.
See the CaCORE::ApplicationService manpage.
Treatment or procedure that the animal model was exposed to in order to initiate or support the development of neoplastic lesions.
The following are all the attributes of the CarcinogenicIntervention object and their data types:
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the CarcinogenicIntervention:
Many to one assoication, use getEnvironmentalFactor
to get the associated EnvironmentalFactor.
Many to one assoication, use getTreatmentSchedule
to get the associated TreatmentSchedule.
CaCORE::CaMOD::CellLine - Perl extension for CellLine.
The CaCORE::CaMOD::CellLine is a Perl object representation of the CaCORE CellLine object.
See the CaCORE::ApplicationService manpage.
Cell lines generated from the animal model.
The following are all the attributes of the CellLine object and their data types:
data type: string
data type: string
data type: long
data type: string
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the CellLine:
One to many assoication, use getPublicationCollection
to get a collection of associated Publication.
CaCORE::CaMOD::Conditionality - Perl extension for Conditionality.
The CaCORE::CaMOD::Conditionality is a Perl object representation of the CaCORE Conditionality object.
See the CaCORE::ApplicationService manpage.
Indicates if a transgene or targeted modification is done conditionally (time or tissue specific).
The following are all the attributes of the Conditionality object and their data types:
data type: string
data type: string
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Conditionality:
CaCORE::CaMOD::ContactInfo - Perl extension for ContactInfo.
The CaCORE::CaMOD::ContactInfo is a Perl object representation of the CaCORE ContactInfo object.
See the CaCORE::ApplicationService manpage.
Information regarding the person who submitted the data.
The following are all the attributes of the ContactInfo object and their data types:
data type: string
data type: string
data type: string
data type: long
data type: string
data type: string
data type: string
data type: string
data type: string
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the ContactInfo:
One to many assoication, use getPartyCollection
to get a collection of associated Party.
CaCORE::CaMOD::EndpointCode - Perl extension for EndpointCode.
The CaCORE::CaMOD::EndpointCode is a Perl object representation of the CaCORE EndpointCode object.
See the CaCORE::ApplicationService manpage.
A endpoint code captures the parameter for measuring success of anti-drug screen test; mean tumor weightm median survival time, etc.
The following are all the attributes of the EndpointCode object and their data types:
data type: string
data type: string
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the EndpointCode:
CaCORE::CaMOD::EngineeredGene - Perl extension for EngineeredGene.
The CaCORE::CaMOD::EngineeredGene is a Perl object representation of the CaCORE EngineeredGene object.
See the CaCORE::ApplicationService manpage.
Manipulated Gene introduced in the animal model.
The following are all the attributes of the EngineeredGene object and their data types:
data type: long
data type: long
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the EngineeredGene:
Many to one assoication, use getConditionality
to get the associated Conditionality.
One to many assoication, use getDatabaseCrossReferenceCollection
to get a collection of associated DatabaseCrossReference.
One to many assoication, use getExpressionFeatureCollection
to get a collection of associated ExpressionFeature.
One to many assoication, use getGeneCollection
to get a collection of associated Gene.
Many to one assoication, use getGenotypeSummary
to get the associated GenotypeSummary.
Many to one assoication, use getImage
to get the associated Image.
CaCORE::CaMOD::EnvironmentalFactor - Perl extension for EnvironmentalFactor.
The CaCORE::CaMOD::EnvironmentalFactor is a Perl object representation of the CaCORE EnvironmentalFactor object.
See the CaCORE::ApplicationService manpage.
Chemical, radiation, hormone treatment or other environmental factor that initiates or supports development of neoplasias.
The following are all the attributes of the EnvironmentalFactor object and their data types:
data type: long
data type: string
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the EnvironmentalFactor:
One to many assoication, use getInducedMutationCollection
to get a collection of associated InducedMutation.
CaCORE::CaMOD::ExpressionFeature - Perl extension for ExpressionFeature.
The CaCORE::CaMOD::ExpressionFeature is a Perl object representation of the CaCORE ExpressionFeature object.
See the CaCORE::ApplicationService manpage.
The expression feature object describes expression pattern of the engineered gene in the cancer model.
The following are all the attributes of the ExpressionFeature object and their data types:
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the ExpressionFeature:
One to many assoication, use getOrganOntologyCollection
to get a collection of associated OrganOntology.
CaCORE::CaMOD::GeneDelivery - Perl extension for GeneDelivery.
The CaCORE::CaMOD::GeneDelivery is a Perl object representation of the CaCORE GeneDelivery object.
See the CaCORE::ApplicationService manpage.
Gene is delivered to specific organs or specific receptors within the animal model. using viral vectors
The following are all the attributes of the GeneDelivery object and their data types:
data type: long
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the GeneDelivery:
Many to one assoication, use getEngineeredGene
to get the associated EngineeredGene.
CaCORE::CaMOD::GeneFunction - Perl extension for GeneFunction.
The CaCORE::CaMOD::GeneFunction is a Perl object representation of the CaCORE GeneFunction object.
See the CaCORE::ApplicationService manpage.
Functions of the engineered genes.
The following are all the attributes of the GeneFunction object and their data types:
data type: string
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the GeneFunction:
Many to one assoication, use getEngineeredGene
to get the associated EngineeredGene.
CaCORE::CaMOD::GeneticAlteration - Perl extension for GeneticAlteration.
The CaCORE::CaMOD::GeneticAlteration is a Perl object representation of the CaCORE GeneticAlteration object.
See the CaCORE::ApplicationService manpage.
Genetic alterations found in the neoplastic lesions of the animal model. These alterations are not made intentionally.
The following are all the attributes of the GeneticAlteration object and their data types:
data type: long
data type: string
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the GeneticAlteration:
CaCORE::CaMOD::GenomicSegment - Perl extension for GenomicSegment.
The CaCORE::CaMOD::GenomicSegment is a Perl object representation of the CaCORE GenomicSegment object.
See the CaCORE::ApplicationService manpage.
Genomic segment extracted from a library e.g. BAC or YAC library to be used in the genetic manipulation of the animal model.
The following are all the attributes of the GenomicSegment object and their data types:
data type: string
data type: long
data type: string
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the GenomicSegment:
One to many assoication, use getEngineeredGeneCollection
to get a collection of associated EngineeredGene.
Many to one assoication, use getSegmentType
to get the associated SegmentType.
CaCORE::CaMOD::GenotypeSummary - Perl extension for GenotypeSummary.
The CaCORE::CaMOD::GenotypeSummary is a Perl object representation of the CaCORE GenotypeSummary object.
See the CaCORE::ApplicationService manpage.
Listing of the genetic changes made deliberately in order to generate the animal model.
The following are all the attributes of the GenotypeSummary object and their data types:
data type: string
data type: long
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the GenotypeSummary:
Many to one assoication, use getNomenclature
to get the associated Nomenclature.
CaCORE::CaMOD::Image - Perl extension for Image.
The CaCORE::CaMOD::Image is a Perl object representation of the CaCORE Image object.
See the CaCORE::ApplicationService manpage.
Images related to the animal model e.g. histology images, blots, and graphics.
The following are all the attributes of the Image object and their data types:
data type: string
data type: long
data type: string
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Image:
Many to one assoication, use getAvailability
to get the associated Availability.
CaCORE::CaMOD::InducedMutation - Perl extension for InducedMutation.
The CaCORE::CaMOD::InducedMutation is a Perl object representation of the CaCORE InducedMutation object.
See the CaCORE::ApplicationService manpage.
Induced mutations are defined as mutations triggered by radiation, chemicals or other means. Progeny of the treated animal inherits the mutation.
The following are all the attributes of the InducedMutation object and their data types:
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the InducedMutation:
One to many assoication, use getEngineeredGeneCollection
to get a collection of associated EngineeredGene.
Many to one assoication, use getEnvironmentalFactor
to get the associated EnvironmentalFactor.
CaCORE::CaMOD::IntegrationType - Perl extension for IntegrationType.
The CaCORE::CaMOD::IntegrationType is a Perl object representation of the CaCORE IntegrationType object.
See the CaCORE::ApplicationService manpage.
Location of the integration of the engineered gene e.g. random or targeted.
The following are all the attributes of the IntegrationType object and their data types:
data type: long
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the IntegrationType:
One to many assoication, use getGenomicSegmentCollection
to get a collection of associated GenomicSegment.
One to many assoication, use getTransgeneCollection
to get a collection of associated Transgene.
CaCORE::CaMOD::InvivoResult - Perl extension for InvivoResult.
The CaCORE::CaMOD::InvivoResult is a Perl object representation of the CaCORE InvivoResult object.
See the CaCORE::ApplicationService manpage.
An Invivo Result captures the results of anti-tumor drug screening.
The following are all the attributes of the InvivoResult object and their data types:
data type: string
data type: long
data type: string
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the InvivoResult:
Many to one assoication, use getAgent
to get the associated Agent.
Many to one assoication, use getEndpointCode
to get the associated EndpointCode.
Many to one assoication, use getTreatmentSchedule
to get the associated TreatmentSchedule.
CaCORE::CaMOD::JaxInfo - Perl extension for JaxInfo.
The CaCORE::CaMOD::JaxInfo is a Perl object representation of the CaCORE JaxInfo object.
See the CaCORE::ApplicationService manpage.
Identification number (stock number) of strain at the Jackson Laboratory, number can be used for ordering the strain; http://www.jax.org.
The following are all the attributes of the JaxInfo object and their data types:
data type: long
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the JaxInfo:
CaCORE::CaMOD::MicroArrayData - Perl extension for MicroArrayData.
The CaCORE::CaMOD::MicroArrayData is a Perl object representation of the CaCORE MicroArrayData object.
See the CaCORE::ApplicationService manpage.
Data of microarray experiments generated from the animal model.
The following are all the attributes of the MicroArrayData object and their data types:
data type: long
data type: string
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the MicroArrayData:
Many to one assoication, use getAvailability
to get the associated Availability.
CaCORE::CaMOD::ModificationType - Perl extension for ModificationType.
The CaCORE::CaMOD::ModificationType is a Perl object representation of the CaCORE ModificationType object.
See the CaCORE::ApplicationService manpage.
The following are all the attributes of the ModificationType object and their data types:
data type: long
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the ModificationType:
One to many assoication, use getTargetedModificationCollection
to get a collection of associated TargetedModification.
CaCORE::CaMOD::Nomenclature - Perl extension for Nomenclature.
The CaCORE::CaMOD::Nomenclature is a Perl object representation of the CaCORE Nomenclature object.
See the CaCORE::ApplicationService manpage.
Official nomenclature name for mouse and rat models.
The following are all the attributes of the Nomenclature object and their data types:
data type: long
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Nomenclature:
CaCORE::CaMOD::Organization - Perl extension for Organization.
The CaCORE::CaMOD::Organization is a Perl object representation of the CaCORE Organization object.
See the CaCORE::ApplicationService manpage.
Organizational unit like a laboratory, institute or consortium.
The following are all the attributes of the Organization object and their data types:
data type: long
data type: string
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Organization:
CaCORE::CaMOD::Party - Perl extension for Party.
The CaCORE::CaMOD::Party is a Perl object representation of the CaCORE Party object.
See the CaCORE::ApplicationService manpage.
Entity that has access to the data, either a person or an organization.
The following are all the attributes of the Party object and their data types:
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Party:
One to many assoication, use getContactInfoCollection
to get a collection of associated ContactInfo.
One to many assoication, use getPartyRoleCollection
to get a collection of associated PartyRole.
CaCORE::CaMOD::PartyRole - Perl extension for PartyRole.
The CaCORE::CaMOD::PartyRole is a Perl object representation of the CaCORE PartyRole object.
See the CaCORE::ApplicationService manpage.
Object connects the party (organization or person) with the animal model.
The following are all the attributes of the PartyRole object and their data types:
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the PartyRole:
One to many assoication, use getAnimalModelCollection
to get a collection of associated AnimalModel.
Many to one assoication, use getParty
to get the associated Party.
Many to one assoication, use getRole
to get the associated Role.
CaCORE::CaMOD::Person - Perl extension for Person.
The CaCORE::CaMOD::Person is a Perl object representation of the CaCORE Person object.
Person extends from domain object Party.
See the CaCORE::ApplicationService manpage.
Person's first and last name and the connection to the party.
The following are all the attributes of the Person object and their data types:
data type: string
data type: string
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Person:
CaCORE::CaMOD::Phenotype - Perl extension for Phenotype.
The CaCORE::CaMOD::Phenotype is a Perl object representation of the CaCORE Phenotype object.
See the CaCORE::ApplicationService manpage.
Phenotype displayed by the animal model such as neoplastic lesions, other diseases, behavioral problem.
The following are all the attributes of the Phenotype object and their data types:
data type: string
data type: string
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Phenotype:
Many to one assoication, use getSexDistribution
to get the associated SexDistribution.
CaCORE::CaMOD::Promoter - Perl extension for Promoter.
The CaCORE::CaMOD::Promoter is a Perl object representation of the CaCORE Promoter object.
See the CaCORE::ApplicationService manpage.
Promoter is a subcategory of the regulatory element.
The following are all the attributes of the Promoter object and their data types:
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Promoter:
Many to one assoication, use getGene
to get the associated Gene.
Many to one assoication, use getRegulatoryElement
to get the associated RegulatoryElement.
CaCORE::CaMOD::Publication - Perl extension for Publication.
The CaCORE::CaMOD::Publication is a Perl object representation of the CaCORE Publication object.
See the CaCORE::ApplicationService manpage.
Publications describing the animal model itself or experiments in which the animal model was used.
The following are all the attributes of the Publication object and their data types:
data type: string
data type: long
data type: long
data type: string
data type: long
data type: long
data type: string
data type: string
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Publication:
Many to one assoication, use getPublicationStatus
to get the associated PublicationStatus.
CaCORE::CaMOD::PublicationStatus - Perl extension for PublicationStatus.
The CaCORE::CaMOD::PublicationStatus is a Perl object representation of the CaCORE PublicationStatus object.
See the CaCORE::ApplicationService manpage.
Status of the publication e.g. published, submitted.
The following are all the attributes of the PublicationStatus object and their data types:
data type: long
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the PublicationStatus:
CaCORE::CaMOD::RegulatoryElement - Perl extension for RegulatoryElement.
The CaCORE::CaMOD::RegulatoryElement is a Perl object representation of the CaCORE RegulatoryElement object.
See the CaCORE::ApplicationService manpage.
A regulatory element controls the expression of a gene and/or and engineered gene.
The following are all the attributes of the RegulatoryElement object and their data types:
data type: long
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the RegulatoryElement:
One to many assoication, use getPromoterCollection
to get a collection of associated Promoter.
Many to one assoication, use getRegulatoryElementType
to get the associated RegulatoryElementType.
Many to one assoication, use getTaxon
to get the associated Taxon.
CaCORE::CaMOD::RegulatoryElementType - Perl extension for RegulatoryElementType.
The CaCORE::CaMOD::RegulatoryElementType is a Perl object representation of the CaCORE RegulatoryElementType object.
See the CaCORE::ApplicationService manpage.
Type of the regulatory element e.g. promoter, polyA signal.
The following are all the attributes of the RegulatoryElementType object and their data types:
data type: long
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the RegulatoryElementType:
CaCORE::CaMOD::RepositoryInfo - Perl extension for RepositoryInfo.
The CaCORE::CaMOD::RepositoryInfo is a Perl object representation of the CaCORE RepositoryInfo object.
See the CaCORE::ApplicationService manpage.
Some animal models are distributed by the MMHCC mouse repository. Object contains information about the availability of a particular model from the repository. A submitter of data to the cancer models database can also indicate if their model should be submitted to the repository.
The following are all the attributes of the RepositoryInfo object and their data types:
data type: long
data type: long
data type: string
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the RepositoryInfo:
CaCORE::CaMOD::Role - Perl extension for Role.
The CaCORE::CaMOD::Role is a Perl object representation of the CaCORE Role object.
See the CaCORE::ApplicationService manpage.
Defines a relationship between two concepts.
The following are all the attributes of the Role object and their data types:
data type: long
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Role:
One to many assoication, use getPartyRoleCollection
to get a collection of associated PartyRole.
CaCORE::CaMOD::ScreeningResult - Perl extension for ScreeningResult.
The CaCORE::CaMOD::ScreeningResult is a Perl object representation of the CaCORE ScreeningResult object.
See the CaCORE::ApplicationService manpage.
A Screening Result captures the results of the tens of thousands of compounds screened for their ability to inhibit the growth of selected yeast strains altered in DNA damage repair or cell cycle control.
The following are all the attributes of the ScreeningResult object and their data types:
data type: float
data type: float
data type: long
data type: float
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the ScreeningResult:
Many to one assoication, use getAgent
to get the associated Agent.
Many to one assoication, use getTreatmentSchedule
to get the associated TreatmentSchedule.
CaCORE::CaMOD::SegmentType - Perl extension for SegmentType.
The CaCORE::CaMOD::SegmentType is a Perl object representation of the CaCORE SegmentType object.
See the CaCORE::ApplicationService manpage.
specifies the type of library that the genomic segment was retrieved from such as BAC or YAC.
The following are all the attributes of the SegmentType object and their data types:
data type: long
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the SegmentType:
CaCORE::CaMOD::SexDistribution - Perl extension for SexDistribution.
The CaCORE::CaMOD::SexDistribution is a Perl object representation of the CaCORE SexDistribution object.
See the CaCORE::ApplicationService manpage.
Object indicated if the phenotype was observed in both sexes or only in one.
The following are all the attributes of the SexDistribution object and their data types:
data type: long
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the SexDistribution:
CaCORE::CaMOD::TargetedModification - Perl extension for TargetedModification.
The CaCORE::CaMOD::TargetedModification is a Perl object representation of the CaCORE TargetedModification object.
See the CaCORE::ApplicationService manpage.
Modification targeted to a specific gene or a specific part of the gene to either suppress the function of the gene or insert marker sequences like loxP sites.
The following are all the attributes of the TargetedModification object and their data types:
data type: string
data type: string
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the TargetedModification:
Many to one assoication, use getEngineeredGene
to get the associated EngineeredGene.
One to many assoication, use getModificationTypeCollection
to get a collection of associated ModificationType.
Many to one assoication, use getYeastModel
to get the associated YeastModel.
CaCORE::CaMOD::Therapy - Perl extension for Therapy.
The CaCORE::CaMOD::Therapy is a Perl object representation of the CaCORE Therapy object.
See the CaCORE::ApplicationService manpage.
Pre-clinical trials experiment conducted on the animal model with the goal to reduce cancer burden.
The following are all the attributes of the Therapy object and their data types:
data type: string
data type: string
data type: long
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Therapy:
Many to one assoication, use getAgent
to get the associated Agent.
One to many assoication, use getPublicationCollection
to get a collection of associated Publication.
Many to one assoication, use getTreatmentSchedule
to get the associated TreatmentSchedule.
CaCORE::CaMOD::Transgene - Perl extension for Transgene.
The CaCORE::CaMOD::Transgene is a Perl object representation of the CaCORE Transgene object.
Transgene extends from domain object EngineeredGene.
See the CaCORE::ApplicationService manpage.
A transgene is an engineered gene consisting at least of a regulatory element and a coding sequence; regulatory element and coding sequence can come from different species.
The following are all the attributes of the Transgene object and their data types:
data type: long
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Transgene:
Many to one assoication, use getIntegrationType
to get the associated IntegrationType.
One to many assoication, use getRegulatoryElementCollection
to get a collection of associated RegulatoryElement.
CaCORE::CaMOD::TreatmentSchedule - Perl extension for TreatmentSchedule.
The CaCORE::CaMOD::TreatmentSchedule is a Perl object representation of the CaCORE TreatmentSchedule object.
See the CaCORE::ApplicationService manpage.
Treatment schedule for the pre-clinical trial / therapeutic experiment describing the dosages of the drug and the times of the treatment.
The following are all the attributes of the TreatmentSchedule object and their data types:
data type: string
data type: long
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the TreatmentSchedule:
CaCORE::CaMOD::TumorCode - Perl extension for TumorCode.
The CaCORE::CaMOD::TumorCode is a Perl object representation of the CaCORE TumorCode object.
See the CaCORE::ApplicationService manpage.
A tumor code captures the tumor type and origin species used for a drug screen test.
The following are all the attributes of the TumorCode object and their data types:
data type: string
data type: string
data type: long
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the TumorCode:
CaCORE::CaMOD::Xenograft - Perl extension for Xenograft.
The CaCORE::CaMOD::Xenograft is a Perl object representation of the CaCORE Xenograft object.
Xenograft extends from domain object AbstractCancerModel.
See the CaCORE::ApplicationService manpage.
This object describes to xenografts (implanting tissue or cell lines from a different species) and allografts (implanting tissue or cell lines form the same species). The grafts are transplanted in immuno-compromised animals where they grow and, depending on the graft material, form tumors.
The following are all the attributes of the Xenograft object and their data types:
data type: string
data type: string
data type: string
data type: string
data type: string
data type: string
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the Xenograft:
Many to one assoication, use getHostTaxon
to get the associated HostTaxon.
One to many assoication, use getInvivoResultCollection
to get a collection of associated InvivoResult.
Many to one assoication, use getOriginTaxon
to get the associated OriginTaxon.
Many to one assoication, use getTumorCode
to get the associated TumorCode.
CaCORE::CaMOD::YeastModel - Perl extension for YeastModel.
The CaCORE::CaMOD::YeastModel is a Perl object representation of the CaCORE YeastModel object.
YeastModel extends from domain object AbstractCancerModel.
See the CaCORE::ApplicationService manpage.
A yeast model captures the yeast strains altered in the NCI Yeast Anticancer Drug Screen.
The following are all the attributes of the YeastModel object and their data types:
Note: Although you can also use the corresponding setter methods to set the attribute values, it is not recommended to do so unless you absolutely have to change the object's attributes.
The following are all the objects that are associated with the YeastModel:
One to many assoication, use getScreeningResultCollection
to get a collection of associated ScreeningResult.
One to many assoication, use getTargetedModificationCollection
to get a collection of associated TargetedModification.
Please do not contact author directly. Send email to ncicb@pop.nci.nih.gov to request support or report a bug.
Shan Jiang <jiangs@mail.nih.gov>
The CaCORE Software License, Version 1.0
Copyright 2001-2005 SAIC. This software was developed in conjunction with the National Cancer Institute, and so to the extent government employees are co-authors, any rights in such works shall be subject to Title 17 of the United States Code, section 105. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice, this list of conditions and the disclaimer of Article 5, below. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the disclaimer of Article 5 in the documentation and/or other materials provided with the distribution. 2. The end-user documentation included with the redistribution, if any, must include the following acknowledgment: "This product includes software developed by SAIC and the National Cancer Institute." If no such end-user documentation is to be included, this acknowledgment shall appear in the software itself, wherever such third-party acknowledgments normally appear. 3. The names "The National Cancer Institute", "NCI" and "SAIC" must not be used to endorse or promote products derived from this software. This license does not authorize the licensee to use any trademarks owned by either NCI or SAIC. 4. This license does not authorize or prohibit the incorporation of this software into any third party proprietary programs. Licensee is expressly made responsible for obtaining any permission required to incorporate this software into third party proprietary programs and for informing licensee's end-users of their obligation to secure any required permissions before incorporating this software into third party proprietary software programs. 5. THIS SOFTWARE IS PROVIDED "AS IS," AND ANY EXPRESSED OR IMPLIED WARRANTIES, (INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, NON-INFRINGEMENT AND FITNESS FOR A PARTICULAR PURPOSE) ARE DISCLAIMED. IN NO EVENT SHALL THE NATIONAL CANCER INSTITUTE, SAIC, OR THEIR AFFILIATES BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.