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For bin/pan_genome_post_analysis
  Run on Fri Mar 27 11:43:32 2015
Reported on Fri Mar 27 11:46:14 2015

Filename/Users/ap13/perl5/lib/perl5/Bio/Factory/LocationFactoryI.pm
StatementsExecuted 7 statements in 118µs
Subroutines
Calls P F Exclusive
Time
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Subroutine
11113µs25µsBio::Factory::LocationFactoryI::::BEGIN@91Bio::Factory::LocationFactoryI::BEGIN@91
1119µs57µsBio::Factory::LocationFactoryI::::BEGIN@92Bio::Factory::LocationFactoryI::BEGIN@92
1119µs69µsBio::Factory::LocationFactoryI::::BEGIN@94Bio::Factory::LocationFactoryI::BEGIN@94
0000s0sBio::Factory::LocationFactoryI::::from_stringBio::Factory::LocationFactoryI::from_string
Call graph for these subroutines as a Graphviz dot language file.
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Code
1#
2# BioPerl module for Bio::Factory::LocationFactoryI
3#
4# Please direct questions and support issues to <bioperl-l@bioperl.org>
5#
6# Cared for by Hilmar Lapp <hlapp at gmx.net>
7#
8# Copyright Hilmar Lapp
9#
10# You may distribute this module under the same terms as perl itself
11
12#
13# (c) Hilmar Lapp, hlapp at gnf.org, 2002.
14# (c) GNF, Genomics Institute of the Novartis Research Foundation, 2002.
15#
16# You may distribute this module under the same terms as perl itself.
17# Refer to the Perl Artistic License (see the license accompanying this
18# software package, or see http://www.perl.com/language/misc/Artistic.html)
19# for the terms under which you may use, modify, and redistribute this module.
20#
21# THIS PACKAGE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR IMPLIED
22# WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF
23# MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE.
24#
25
26# POD documentation - main docs before the code
27
28=head1 NAME
29
30Bio::Factory::LocationFactoryI - A factory interface for generating locations from a string
31
32=head1 SYNOPSIS
33
34 # Do not use directly, see Bio::Factory::LocationFactory for example
35 use Bio::Factory::FTLocationFactory;
36 my $locfact = Bio::Factory::FTLocationFactory->new();
37 my $location = $locfact->from_string("1..200");
38 print $location->start(), " ", $location->end(), " ", $location->strand,"\n";
39
40=head1 DESCRIPTION
41
42An interface for Location Factories which generate Bio::LocationI
43objects from a string.
44
45=head1 FEEDBACK
46
47=head2 Mailing Lists
48
49User feedback is an integral part of the evolution of this and other
50Bioperl modules. Send your comments and suggestions preferably to
51the Bioperl mailing list. Your participation is much appreciated.
52
53 bioperl-l@bioperl.org - General discussion
54 http://bioperl.org/wiki/Mailing_lists - About the mailing lists
55
56=head2 Support
57
58Please direct usage questions or support issues to the mailing list:
59
60I<bioperl-l@bioperl.org>
61
62rather than to the module maintainer directly. Many experienced and
63reponsive experts will be able look at the problem and quickly
64address it. Please include a thorough description of the problem
65with code and data examples if at all possible.
66
67=head2 Reporting Bugs
68
69Report bugs to the Bioperl bug tracking system to help us keep track
70of the bugs and their resolution. Bug reports can be submitted via the
71web:
72
73 https://github.com/bioperl/bioperl-live/issues
74
75=head1 AUTHOR - Hilmar Lapp
76
77Email hlapp at gmx.net
78
79=head1 APPENDIX
80
81The rest of the documentation details each of the object methods.
82Internal methods are usually preceded with a _
83
84=cut
85
86
87# Let the code begin...
88
89
90package Bio::Factory::LocationFactoryI;
91221µs237µs
# spent 25µs (13+12) within Bio::Factory::LocationFactoryI::BEGIN@91 which was called: # once (13µs+12µs) by base::import at line 91
use strict;
# spent 25µs making 1 call to Bio::Factory::LocationFactoryI::BEGIN@91 # spent 12µs making 1 call to strict::import
92229µs2105µs
# spent 57µs (9+48) within Bio::Factory::LocationFactoryI::BEGIN@92 which was called: # once (9µs+48µs) by base::import at line 92
use Carp;
# spent 57µs making 1 call to Bio::Factory::LocationFactoryI::BEGIN@92 # spent 48µs making 1 call to Exporter::import
93
94266µs269µs
# spent 69µs (9+60) within Bio::Factory::LocationFactoryI::BEGIN@94 which was called: # once (9µs+60µs) by base::import at line 94
use base qw(Bio::Root::RootI);
# spent 69µs making 1 call to Bio::Factory::LocationFactoryI::BEGIN@94 # spent 60µs making 1 call to base::import, recursion: max depth 1, sum of overlapping time 60µs
95
96=head2 from_string
97
98 Title : from_string
99 Usage : $loc = $locfactory->from_string("100..200");
100 Function: Parses the given string and returns a Bio::LocationI implementing
101 object representing the location encoded by the string.
102
103 Different implementations may support different encodings. An
104 example of a commonly used encoding is the Genbank feature table
105 encoding of locations.
106 Example :
107 Returns : A Bio::LocationI implementing object.
108 Args : A string.
109
110
111=cut
112
113sub from_string{
114 my ($self,@args) = @_;
115
116 $self->throw_not_implemented();
117}
118
11912µs1;