Source Information for ens_36_segdup_washu

Description

Segmental duplication dataset compiled by seeking homologies within the reference sequence.

The data were kindly provided by Xinwei She and Evan Eichler at the University of Washington.

For a region to be included, at least 1 Kb of the total sequence (containing at least 500 bp of non-RepeatMasked sequence) had to align to another portion of the genome with a sequence identity of at least 90%.

Reference:
Bailey JA, Gu Z, Clark RA, Reinert K, Samonte RV, Schwartz S, Adams MD, Myers EW, Li PW, Eichler EE (2002) Recent segmental duplications in the human genome. Science 297:1003-7.

Bailey JA, Yavor AM, Massa HF, Trask BJ, Eichler EE (2001) Segmental duplications: organization and impact within the current human genome project assembly. Genome Res 11:1005-17

She X, Jiang Z, Clark RA, Liu G, Cheng Z, Tuzun E, Church DM, Sutton G, Halpern AL, Eichler EE (2004) Shotgun sequence assembly and recent segmental duplications within the human genome. Nature 431:927-30

Key

Orientation
   Red: Pair members in direct orientation
   Green: Pair members in inverted orientation
   Blue: Pair members on different chromosomes
     
% Identity
   Over 99% identity
   97 - 99% identity
   95 - 97% identity
   Less than 95% identity
     
Spacing
   Less than 100Kb apart
   100Kb - 1Mb apart
   1 - 5Mb apart
   5 - 10Mb apart
   More than 10Mb apart