Segmental duplication dataset compiled by seeking homologies within the reference sequence.
The data come from:
http://projects.tcag.ca/humandup/segmental_b35/duplication.hg17.gff
Cheung J, Estivill X, Khaja R, MacDonald JR, Lau K, Tsui L-C, Scherer SW. Genome-wide detection of segmental duplications and potential assembly errors in the human genome sequence. Genome Biol. 2003;4(4):R25. Epub 2003 Mar 17
Orientation | ||
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Red: Pair members in direct orientation | |
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Green: Pair members in inverted orientation | |
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Blue: Pair members on different chromosomes | |
% Identity | ||
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Over 99% identity | |
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97 - 99% identity | |
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95 - 97% identity | |
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Less than 95% identity | |
Spacing | ||
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Less than 100Kb apart | |
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100Kb - 1Mb apart | |
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1 - 5Mb apart | |
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5 - 10Mb apart | |
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More than 10Mb apart |