Report for gi|1255723|gb|U29581.1|ECU29581
Codon Adaptation Index (CAI) for sequence : 0.78
GC percentage for sequence : 50.82%
GENETIC CODE USED : 1 more about genetic code
CODON USAGE
| CODON | GCC | GCA | GCG | GCT | CGA | AGG | CGT | CGG | AGA | CGC | AAC | AAT | GAC | GAT | TGC | TGT | CAA | CAG | GAG | GAA | GGA | GGT | GGG | GGC | CAC | CAT | ATT | ATC | ATA | CTT | CTG | TTA | CTA | CTC | TTG | AAG | AAA | ATG | TTT | TTC | CCG | CCC | CCA | CCT | AGT | TCA | AGC | TCG | TCC | TCT | TAG | TGA | TAA | ACT | ACA | ACC | ACG | TGG | TAT | TAC | GTC | GTG | GTT | GTA |
| AMINOACID | Ala | Ala | Ala | Ala | Arg | Arg | Arg | Arg | Arg | Arg | Asn | Asn | Asp | Asp | Cys | Cys | Gln | Gln | Glu | Glu | Gly | Gly | Gly | Gly | His | His | Ile | Ile | Ile | Leu | Leu | Leu | Leu | Leu | Leu | Lys | Lys | Met | Phe | Phe | Pro | Pro | Pro | Pro | Ser | Ser | Ser | Ser | Ser | Ser | Stop | Stop | Stop | Thr | Thr | Thr | Thr | Trp | Tyr | Tyr | Val | Val | Val | Val |
| COUNT | 542 | 535 | 604 | 344 | 326 | 225 | 325 | 426 | 250 | 605 | 460 | 451 | 294 | 387 | 443 | 273 | 425 | 550 | 194 | 398 | 221 | 353 | 197 | 436 | 397 | 430 | 435 | 497 | 328 | 324 | 587 | 352 | 138 | 218 | 351 | 338 | 576 | 396 | 554 | 492 | 483 | 277 | 526 | 273 | 244 | 461 | 399 | 387 | 267 | 264 | 133 | 345 | 330 | 257 | 309 | 405 | 394 | 391 | 309 | 296 | 287 | 287 | 420 | 280 |
Relative Synonimous Codon Usage (RSCU)
| CODON | GCC | GCA | GCG | GCT | CGA | AGG | CGT | CGG | AGA | CGC | AAC | AAT | GAC | GAT | TGC | TGT | CAA | CAG | GAG | GAA | GGA | GGT | GGG | GGC | CAC | CAT | ATT | ATC | ATA | CTT | CTG | TTA | CTA | CTC | TTG | AAG | AAA | ATG | TTT | TTC | CCG | CCC | CCA | CCT | AGT | TCA | AGC | TCG | TCC | TCT | TAG | TGA | TAA | ACT | ACA | ACC | ACG | TGG | TAT | TAC | GTC | GTG | GTT | GTA |
| AMINOACID | Ala | Ala | Ala | Ala | Arg | Arg | Arg | Arg | Arg | Arg | Asn | Asn | Asp | Asp | Cys | Cys | Gln | Gln | Glu | Glu | Gly | Gly | Gly | Gly | His | His | Ile | Ile | Ile | Leu | Leu | Leu | Leu | Leu | Leu | Lys | Lys | Met | Phe | Phe | Pro | Pro | Pro | Pro | Ser | Ser | Ser | Ser | Ser | Ser | Stop | Stop | Stop | Thr | Thr | Thr | Thr | Trp | Tyr | Tyr | Val | Val | Val | Val |
| RSCU | 1.07 | 1.06 | 1.19 | 0.68 | 0.91 | 0.63 | 0.90 | 1.18 | 0.70 | 1.68 | 1.01 | 0.99 | 0.86 | 1.14 | 1.24 | 0.76 | 0.87 | 1.13 | 0.66 | 1.34 | 0.73 | 1.17 | 0.65 | 1.44 | 0.96 | 1.04 | 1.04 | 1.18 | 0.78 | 0.99 | 1.79 | 1.07 | 0.42 | 0.66 | 1.07 | 0.74 | 1.26 | 1.00 | 1.06 | 0.94 | 1.24 | 0.71 | 1.35 | 0.70 | 0.72 | 1.37 | 1.18 | 1.15 | 0.79 | 0.78 | 0.49 | 1.28 | 1.23 | 0.75 | 0.91 | 1.19 | 1.15 | 1.00 | 1.02 | 0.98 | 0.90 | 0.90 | 1.32 | 0.88 |
Relative Adaptiveness of Codon
| CODON | GCC | GCA | GCG | GCT | CGA | AGG | CGT | CGG | AGA | CGC | AAC | AAT | GAC | GAT | TGC | TGT | CAA | CAG | GAG | GAA | GGA | GGT | GGG | GGC | CAC | CAT | ATT | ATC | ATA | CTT | CTG | TTA | CTA | CTC | TTG | AAG | AAA | ATG | TTT | TTC | CCG | CCC | CCA | CCT | AGT | TCA | AGC | TCG | TCC | TCT | TAG | TGA | TAA | ACT | ACA | ACC | ACG | TGG | TAT | TAC | GTC | GTG | GTT | GTA |
| AMINOACID | Ala | Ala | Ala | Ala | Arg | Arg | Arg | Arg | Arg | Arg | Asn | Asn | Asp | Asp | Cys | Cys | Gln | Gln | Glu | Glu | Gly | Gly | Gly | Gly | His | His | Ile | Ile | Ile | Leu | Leu | Leu | Leu | Leu | Leu | Lys | Lys | Met | Phe | Phe | Pro | Pro | Pro | Pro | Ser | Ser | Ser | Ser | Ser | Ser | Stop | Stop | Stop | Thr | Thr | Thr | Thr | Trp | Tyr | Tyr | Val | Val | Val | Val |
| RAC | 0.90 | 0.89 | 1.00 | 0.57 | 0.54 | 0.37 | 0.54 | 0.70 | 0.41 | 1.00 | 1.00 | 0.98 | 0.76 | 1.00 | 1.00 | 0.62 | 0.77 | 1.00 | 0.49 | 1.00 | 0.51 | 0.81 | 0.45 | 1.00 | 0.92 | 1.00 | 0.88 | 1.00 | 0.66 | 0.55 | 1.00 | 0.60 | 0.24 | 0.37 | 0.60 | 0.59 | 1.00 | 1.00 | 1.00 | 0.89 | 0.92 | 0.53 | 1.00 | 0.52 | 0.53 | 1.00 | 0.87 | 0.84 | 0.58 | 0.57 | 0.39 | 1.00 | 0.96 | 0.63 | 0.76 | 1.00 | 0.97 | 1.00 | 1.00 | 0.96 | 0.68 | 0.68 | 1.00 | 0.67 |
Monomers
| A | 17734 |
| T | 17241 |
| G | 17184 |
| C | 18961 |
Source code is available.