Bioconductor Task View: DNACopyNumber

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Package Maintainer Title
aCGH Jane Fridlyand Classes and functions for Array Comparative Genomic Hybridization data.
beadarraySNP Jan Oosting Normalization and reporting of Illumina SNP bead arrays
CGHcall Sjoerd Vosse Calling aberrations for array CGH tumor profiles.
DNAcopy Venkatraman E. Seshan DNA copy number data analysis
GLAD Philippe Hupe Gain and Loss Analysis of DNA
MANOR Pierre Neuvial CGH Micro-Array NORmalization
quantsmooth Jan Oosting Quantile smoothing and genomic visualization of array data
reb Karl J. Dykema Regional Expression Biases
SMAP Robin Andersson A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling
snapCGH John Marioni Segmentation, normalisation and processing of aCGH data.
SNPchip Robert Scharpf Classes and Methods for high throughput SNP chip data
VanillaICE Robert Scharpf Methods for fitting Hidden Markov Models to SNP chip data