Bioconductor Task View: DataImport

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Package Maintainer Title
aCGH Jane Fridlyand Classes and functions for Array Comparative Genomic Hybridization data.
affxparser Kasper Daniel Hansen Affymetrix File Parsing SDK
affyio Benjamin Milo Bolstad Tools for parsing Affymetrix data files
affylmGUI Keith Satterley GUI for affy analysis using limma package
arrayMagic Andreas Buness two-colour cDNA array quality control and preprocessing
beadarraySNP Jan Oosting Normalization and reporting of Illumina SNP bead arrays
BeadExplorer Gareth Elvidge QC, normalisation, annotation and exploration of Illumina BeadChip data
codelink Diego Diez Manipulation of Codelink Bioarrays data.
ctc Antoine Lucas Cluster and Tree Conversion.
exonmap Crispin Miller High level analysis of Affymetrix exon array data
GEOquery Sean Davis Get data from NCBI Gene Expression Omnibus (GEO)
limma Gordon Smyth Linear Models for Microarray Data
limmaGUI Keith Satterley GUI for limma package
makecdfenv James W. MacDonald CDF Environment Maker
MANOR Pierre Neuvial CGH Micro-Array NORmalization
oneChannelGUI Raffaele A Calogero This package extends the capabilities of affylmGUI graphical interface.
Ringo J. Toedling R Investigation of NimbleGen Oligoarrays
SAGx Per Broberg Statistical Analysis of the GeneChip
simpleaffy Crispin Miller Very simple high level analysis of Affymetrix data