Bioconductor Task View: QualityControl

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Package Maintainer Title
AffyExpress Xuejun Arthur Li Affymetrix Quality Assessment and Analysis Tool
affylmGUI Keith Satterley GUI for affy analysis using limma package
affyPLM Ben Bolstad Methods for fitting probe-level models
affyQCReport Craig Parman QC Report Generation for affyBatch objects
altcdfenvs Laurent Gautier alternative cdfenvs
arrayMagic Andreas Buness two-colour cDNA array quality control and preprocessing
arrayQuality Agnes Paquet Assessing array quality on spotted arrays
arrayQualityMetrics Audrey Kauffmann Quality metrics on ExpressionSets
beadarray Mark Dunning Quality control and low-level analysis of BeadArrays
BeadExplorer Gareth Elvidge QC, normalisation, annotation and exploration of Illumina BeadChip data
limma Gordon Smyth Linear Models for Microarray Data
limmaGUI Keith Satterley GUI for limma package
MANOR Pierre Neuvial CGH Micro-Array NORmalization
OLIN Matthias Futschik Optimized local intensity-dependent normalisation of two-color microarrays
OLINgui Matthias Futschik Graphical user interface for OLIN
oneChannelGUI Raffaele A Calogero This package extends the capabilities of affylmGUI graphical interface.
rama Raphael Gottardo Robust Analysis of MicroArrays
Ringo J. Toedling R Investigation of NimbleGen Oligoarrays
simpleaffy Crispin Miller Very simple high level analysis of Affymetrix data
spikeLI Enrico Carlon Affymetrix Spike-in Langmuir Isotherm Data Analysis Tool
spotSegmentation Chris Fraley Microarray Spot Segmentation and Gridding for Blocks of Microarray Spots