hgu95eMAPCOUNTS {hgu95e.db} | R Documentation |
hgu95eMAPCOUNTS provides the "map count" (i.e. the count of mapped keys) for each map in package hgu95e.db.
This "map count" information is precalculated and stored in the package
annotation DB. This allows some quality control and is used by the
checkMAPCOUNTS
function defined in
AnnotationDbi to compare and validate different methods (like
count.mappedkeys(x)
or sum(!is.na(as.list(x)))
)
for getting the "map count" of a given map.
mappedkeys
,
count.mappedkeys
,
checkMAPCOUNTS
hgu95eMAPCOUNTS mapnames <- names(hgu95eMAPCOUNTS) hgu95eMAPCOUNTS[mapnames[1]] x <- get(mapnames[1]) sum(!is.na(as.list(x))) count.mappedkeys(x) # much faster! ## Check the "map count" of all the maps in package hgu95e.db checkMAPCOUNTS("hgu95e.db")