| agARACYC {ag.db} | R Documentation |
AraCyc http://www.arabidopsis.org/tools/aracyc/ maintains pathway data for Arabidopsis thaliana. agARACYC maps probe identifiers to the common names of the pathways in which the genes represented by the probe identifiers are involved. Information is obtained from AraCyc.
Annotation based on data provided by: Tair ( ftp://ftp.arabidopsis.org/Pathways/aracyc_dump_20070703 ) on 2007-Aug2
x <- agARACYC
# Get the probe identifiers that are mapped to pathways
mapped_probes <- mappedkeys(x)
# Convert to a list
xx <- as.list(x[mapped_probes])
if(length(xx) > 0) {
# Get the pathways for the first five probes
xx[1:5]
# For the first probe
xx[[1]]
}