Package: GOSemSim
Type: Package
Title: GO-terms Semantic Similarity Measures
Version: 1.16.1
Author: Guangchuang Yu
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin
    and Wang respectively for estimating GO semantic similarities. Support many
    species, including Anopheles, Arabidopsis, Bovine, Canine, Chicken, Chimp,
    Coelicolor, E coli strain K12 and Sakai, Fly, Human, Malaria, Mouse, Pig,
    Rhesus, Rat, Worm, Xenopus, Yeast, and Zebrafish.
Depends: R (>= 2.10), Rcpp
LinkingTo: Rcpp
Imports: methods, AnnotationDbi, GO.db, org.Hs.eg.db
Suggests: DOSE, clusterProfiler
biocViews: GO, Clustering, Pathways, NetworkAnalysis
Collate: 'clusterSim.R' 'combineMethods.R' 'computeIC.R' 'ICMethods.R'
        'gene2GO.R' 'geneSim.R' 'goSim.R' 'termSim.R' 'WangMethod.R'
        'utilities.R' 'zzz.R' 'GOSemSim-package.R' 'mgeneSim.R'
        'mgoSim.R' 'mclusterSim.R'
License: GPL-2
URL: http://bioinformatics.oxfordjournals.org/content/26/7/976.full
Packaged: 2012-10-12 05:23:49 UTC; biocbuild
Built: R 2.15.1; i386-pc-mingw32; 2012-10-12 11:01:09 UTC; windows
Archs: i386, x64
