Package: GenomicRanges
Title: Representation and manipulation of genomic intervals
Description: The ability to efficiently store genomic annotations and
	alignments is playing a central role when it comes to analyze
	high-throughput sequencing data (a.k.a. NGS data). The package
	defines general purpose containers for storing genomic intervals
	as well as more specialized containers for storing alignments
	against a reference genome.
Version: 1.10.7
Author: P. Aboyoun, H. Pages and M. Lawrence
Maintainer: Bioconductor Package Maintainer
        <maintainer@bioconductor.org>
biocViews: Genetics, Sequencing, HighThroughputSequencing, Annotation
Depends: R (>= 2.10), methods, BiocGenerics (>= 0.1.12), IRanges (>=
        1.15.42)
Imports: methods, utils, BiocGenerics, IRanges
LinkingTo: IRanges
Suggests: Biostrings (>= 2.25.3), Rsamtools (>= 1.9.21), BSgenome,
        rtracklayer, GenomicFeatures, VariantAnnotation, edgeR, DESeq,
        DEXSeq, EatonEtAlChIPseq (>= 0.0.3), leeBamViews, pasilla,
        pasillaBamSubset, org.Sc.sgd.db,
        TxDb.Dmelanogaster.UCSC.dm3.ensGene,
        BSgenome.Scerevisiae.UCSC.sacCer2,
        BSgenome.Dmelanogaster.UCSC.dm3, RUnit, digest
License: Artistic-2.0
Collate: utils.R phicoef.R cigar-utils.R transcript-utils.R
        constraint.R makeSeqnameIds.R seqinfo.R strand-utils.R
        Seqinfo-class.R GenomicRanges-class.R GRanges-class.R
        GenomicRanges-comparison.R GenomicRangesList-class.R
        GRangesList-class.R GappedAlignments-class.R
        GappedAlignmentPairs-class.R SummarizedExperiment-class.R
        SummarizedExperiment-rowData-methods.R countGenomicOverlaps.R
        seqlevels-utils.R resolveHits-methods.R summarizeOverlaps.R
        RangesMapping-methods.R RangedData-methods.R
        intra-range-methods.R inter-range-methods.R setops-methods.R
        findOverlaps-methods.R nearest-methods.R
        encodeOverlaps-methods.R coverage-methods.R
        findSpliceOverlaps-methods.R findSpliceOverlaps-utils.R
        test_GenomicRanges_package.R zzz.R
Packaged: 2013-02-28 06:45:03 UTC; biocbuild
Built: R 2.15.2; i386-w64-mingw32; 2013-02-28 12:08:16 UTC; windows
Archs: i386, x64
