Package: HTqPCR
Type: Package
Title: Automated analysis of high-throughput qPCR data
Version: 1.12.0
Author: Heidi Dvinge, Paul Bertone
Maintainer: Heidi Dvinge <heidi@ebi.ac.uk>
Description: Analysis of Ct values from high throughput quantitative real-time PCR (qPCR) assays across multiple conditions or replicates. The input data can be from spatially-defined formats such ABI TaqMan Low Density Arrays or OpenArray; LightCycler from Roche Applied Science; the CFX plates from Bio-Rad Laboratories; conventional 96- or 384-well plates; or microfluidic devices such as the Dynamic Arrays from Fluidigm Corporation. HTqPCR handles data loading, quality assessment, normalization, visualization and parametric or non-parametric testing for statistical significance in Ct values between features (e.g. genes, microRNAs).
Reference: Heidi Dvinge and Paul Bertone (2009). HTqPCR:
        High-throughput analysis and visualization of quantitative
        real-time PCR data in R Bioinformatics.
License: Artistic-2.0
URL: http://www.ebi.ac.uk/bertone/software
LazyLoad: yes
Depends: Biobase, RColorBrewer, limma
Suggests: statmod
Imports: affy, Biobase, gplots, graphics, grDevices, limma, methods,
        RColorBrewer, stats, stats4, utils
biocViews: MicrotitrePlateAssay, DifferentialExpression,
        GeneExpression, DataImport, QualityControl, Preprocessing,
        Bioinformatics, Visualization, MultipleComparisons, qPCR
Packaged: 2012-10-02 07:00:22 UTC; biocbuild
Built: R 2.15.1; ; 2012-10-02 13:01:47 UTC; windows
