Package: chroGPS
Type: Package
Title: chroGPS: navigating through the epigenome
Version: 1.0.1
Date: 2012-09-30
Author: Oscar Reina, David Rossell
Maintainer: Oscar Reina <oscar.reina@irbbarcelona.org>
Description: We provide intuitive maps to visualize the association between genetic elements, with emphasis on epigenetics. The approach is based on Multi-Dimensional Scaling. We provide several sensible distance metrics, and adjustment procedures to remove systematic biases typically observed when merging data obtained under different technologies or genetic backgrounds.
License: GPL (>=2)
Depends: R (>= 2.13.0), IRanges, methods, Biobase, MASS, graphics,
        stats, rgl
Imports: graphics, cluster, DPpackage
Enhances: multicore
Collate: adjustPeaks.R distGPS.R domainDist.R mds-class.R mds.R
        procrustesAdj.R clusGPS.R geneSetGPS.R getmodEncode.R
        gff2RDList.R
LazyLoad: yes
biocViews: Visualization, Clustering
Packaged: 2012-10-09 06:26:37 UTC; biocbuild
Built: R 2.15.1; ; 2012-10-09 10:48:33 UTC; windows
