calcIntegerCopyNumbers	calcIntegerCopyNumbers
calcIntegerCopyNumbers,CNVDetectionResult-method	CNVDetectionResult
cn.mops	cn.mops
CNVDetectionResult	CNVDetectionResult
CnvDetectionResult	CNVDetectionResult
cnvdetectionresult	CNVDetectionResult
CNVDetectionResult-class	CNVDetectionResult
cnvr	cnvr
cnvr,CNVDetectionResult-method	CNVDetectionResult
CNVRanges	CNVRanges
cnvs	cnvs
cnvs,CNVDetectionResult-method	CNVDetectionResult
exomecn.mops	exomecn.mops
exomeCounts	exomeCounts
getReadCountsFromBAM	getReadCountsFromBAM
getSegmentReadCountsFromBAM	getSegmentReadCountsFromBAM
gr	gr
gr,CNVDetectionResult-method	CNVDetectionResult
haplocn.mops	haplocn.mops
individualCall	individualCall
individualCall,CNVDetectionResult-method	CNVDetectionResult
iniCall	iniCall
iniCall,CNVDetectionResult-method	CNVDetectionResult
integerCopyNumber	integerCopyNumber
integerCopyNumber,CNVDetectionResult-method	CNVDetectionResult
localAssessments	localAssessments
localAssessments,CNVDetectionResult-method	CNVDetectionResult
normalizeChromosomes	normalizeChromosomes
normalizedData	normalizedData
normalizedData,CNVDetectionResult-method	CNVDetectionResult
normalizeGenome	normalizeGenome
params	params
params,CNVDetectionResult-method	CNVDetectionResult
plot,CNVDetectionResult,missing-method	plot
plot-methods	plot
posteriorProbs	posteriorProbs
posteriorProbs,CNVDetectionResult-method	CNVDetectionResult
sampleNames	sampleNames
sampleNames,CNVDetectionResult-method	CNVDetectionResult
segment	segment
segmentation	segmentation
segmentation,CNVDetectionResult-method	CNVDetectionResult
segplot	segplot
segplot,CNVDetectionResult-method	CNVDetectionResult
show,CNVDetectionResult-method	show
show-methods	show
X	X
XRanges	XRanges
