Package: crlmm
Type: Package
Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for
        Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
Version: 1.16.9
Author: Benilton S Carvalho, Robert Scharpf, Matt Ritchie, Ingo Ruczinski, Rafael A Irizarry
Maintainer: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>,
        Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie
        <mritchie@wehi.EDU.AU>
Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms
License: Artistic-2.0
Depends: R (>= 2.14.0), oligoClasses (>= 1.19.39), preprocessCore (>=
        1.17.7)
LinkingTo: preprocessCore (>= 1.17.7)
Imports: methods, Biobase (>= 2.15.4), BiocGenerics, affyio (>=
        1.23.2), ellipse, genefilter (>= 1.37.1), mvtnorm, splines,
        stats, SNPchip, utils, lattice, ff, foreach, RcppEigen
Suggests: hapmapsnp6, genomewidesnp6Crlmm (>= 1.0.4), GGdata, snpStats,
        ellipse, RUnit
Collate: AllGenerics.R AllClasses.R methods-AssayData.R methods-CNSet.R
        methods-CNSetLM.R methods-eSet.R methods-SnpSuperSet.R
        methods-PredictionRegion.R cnrma-functions.R cnset-accessors.R
        crlmm-functions.R crlmmGT2.R crlmm-illumina.R
        snprma-functions.R utils.R zzz.R test_crlmm_package.R
LazyLoad: yes
biocViews: Microarray, Preprocessing, SNP, Bioinformatics,
        CopyNumberVariants
Packaged: 2012-11-22 07:31:03 UTC; biocbuild
Built: R 2.15.2; i386-w64-mingw32; 2012-11-22 13:22:48 UTC; windows
Archs: i386, x64
