ddgraph-package	ddgraph-package
$,CITestResult-method	operators-dash-CITestResult
$,DDDataSet-method	operators-dash-DDDataSet
$,DDGraph-method	operators-dash-DDGraph
activePaths	activePaths
adjC.allVarInx	adjC-dot-allVarInx
adjC.allVarNames	adjC-dot-allVarNames
adjC.condSetSize	adjC-dot-condSetSize
adjC.targetInx	adjC-dot-targetInx
adjC.toIDs	adjC-dot-toIDs
biased.bn.fit	biased-dot-bn-dot-fit
biased.graph	biased-dot-graph
blockingNodes	blockingNodes
blockingVariables	blockingVariables
calcDependence	calcDependence
calculateNCPCRobustnessStats	calculateNCPCRobustnessStats
chisq.val	chisq-dot-val
ciTest	ciTest-comma-DDDataSet-dash-method
ciTest,DDDataSet-method	ciTest-comma-DDDataSet-dash-method
CITestResult	CITestResult-dash-class
CITestResult-class	CITestResult-dash-class
CITestResultID	CITestResultID
CITestResultVar	CITestResultVar
classLabels	classLabels-comma-FurlongDataSet-dash-method
classLabels,FurlongDataSet-method	classLabels-comma-FurlongDataSet-dash-method
color.legend.DDGraph	color-dot-legend-dot-DDGraph
combinationsTest	combinationsTest
convertPvalueToColorIndex	convertPvalueToColorIndex
convertToFactor	convertToFactor
customPlotPCAlgo	customPlotPCAlgo
datasetName	datasetName-comma-DDDataSet-dash-method
datasetName,DDDataSet-method	datasetName-comma-DDDataSet-dash-method
dataType	dataType-comma-DDDataSet-dash-method
dataType,DDDataSet-method	dataType-comma-DDDataSet-dash-method
DDDataSet	DDDataSet-dash-class
DDDataSet-class	DDDataSet-dash-class
DDGraph	DDGraph-dash-class
ddgraph	ddgraph-package
DDGraph-class	DDGraph-dash-class
DDGraphEdge	DDGraphEdge-dash-class
DDGraphEdge-class	DDGraphEdge-dash-class
entropyFromFreq	entropyFromFreq
estimateNetworkDistribution	estimateNetworkDistribution
extract.targetInx	extract-dot-targetInx
extractCITestResultProperty	extractCITestResultProperty
foldChangeFromFreq	foldChangeFromFreq
formulaFalseNeg	formulaFalseNeg
FurlongDataSet	FurlongDataSet-dash-class
FurlongDataSet-class	FurlongDataSet-dash-class
graph.to.bn	graph-dot-to-dot-bn
independent.contributions.formula	independent-dot-contributions-dot-formula
independent.contributions.formula.mul	independent-dot-contributions-dot-formula-dot-mul
initialize,DDDataSet-method	initialize-comma-DDDataSet-dash-method
initialize,DDGraph-method	initialize-comma-DDGraph-dash-method
is.binary	is-dot-binary
logseq	logseq
loocv	loocv
makeDDDataSet	makeDDDataSet
makeNCPCRobustness	makeNCPCRobustness
mapEnrichmentToColors	mapEnrichmentToColors
mapEnrichmentToColorsDual	mapEnrichmentToColorsDual
mcMITest	mcMITest
mcX2CLoop	mcX2CLoop
mcX2Test	mcX2Test
mcX2TestB50k	mcX2TestB50k
mesoBin	mesoBin
mesoCont	mesoCont
myX2c	myX2c
names,CITestResult-method	names-comma-CITestResult-dash-method
names,DDDataSet-method	names-comma-DDDataSet-dash-method
names,DDGraph-method	names-comma-DDGraph-dash-method
names,FurlongDataSet-method	names-comma-FurlongDataSet-dash-method
ncpc	ncpc
ncpcResampling	ncpcResampling
NCPCRobustness	NCPCRobustness-dash-class
NCPCRobustness-class	NCPCRobustness-dash-class
pcalgMB	pcalgMB
pcalgNBR	pcalgNBR
plot	plot-comma-DDGraph-comma-missing-dash-method
plot,DDGraph,missing-method	plot-comma-DDGraph-comma-missing-dash-method
plotBNLearn	plotBNLearn
plotPCalg	plotPCalg
plotSVMPerformance	plotSVMPerformance
predSVM	predSVM
prob.distr.norm	prob-dot-distr-dot-norm
prob.distr.unif	prob-dot-distr-dot-unif
pValueAfterMultipleTesting	pValueAfterMultipleTesting
random.bn.fit	random-dot-bn-dot-fit
rawData	rawData-comma-DDDataSet-dash-method
rawData,DDDataSet-method	rawData-comma-DDDataSet-dash-method
readFurlongData	readFurlongData
recalculateSVMparams	recalculateSVMparams
show,CITestResult-method	show-comma-CITestResult-dash-method
show,DDDataSet-method	show-comma-DDDataSet-dash-method
show,DDGraph-method	show-comma-DDGraph-dash-method
show,DDGraphEdge-method	show-comma-DDGraphEdge-dash-method
signalMatrix	signalMatrix-comma-FurlongDataSet-dash-method
signalMatrix,FurlongDataSet-method	signalMatrix-comma-FurlongDataSet-dash-method
svmFeatureSelectionLOOCV	svmFeatureSelectionLOOCV
toDDDataSet	toDDDataSet-comma-FurlongDataSet-dash-method
toDDDataSet,FurlongDataSet-method	toDDDataSet-comma-FurlongDataSet-dash-method
toyExample	toyExample
variableNames	variableNames-comma-DDDataSet-dash-method
variableNames,DDDataSet-method	variableNames-comma-DDDataSet-dash-method
[	operators-dash-DDDataSet
[,DDDataSet,ANY,ANY,ANY-method	operators-dash-DDDataSet
[,DDDataSet,ANY,ANY-method	operators-dash-DDDataSet
[,DDDataSet-method	operators-dash-DDDataSet
[[,CITestResult,ANY,ANY-method	operators-dash-CITestResult
[[,CITestResult-method	operators-dash-CITestResult
[[,DDDataSet-method	operators-dash-DDDataSet
