# Analysis of high-throughput microscopy-based screens

## Documentation for package ‘imageHTS’ version 1.8.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

collectCellFeatures | Collect cell features.
countObjects | Count the number of objects in a segmented image
extractFeatures | Extract features from segmented images.
fileHTS | Get access to screen data files
getCellFtrsATH | Segmentation and quantification of cells stained for DNA, actin and tubulin.
getImageConf | Get the imageHTS configuration
getUnames | Get well unique names
getWellFeatures | Get well metadata, features and annotation information
highlightSegmentation | Highlight segmented objects in an image
imageHTS | Package overview
imageHTS-class | Package overview
installCellPicker | Set up imageHTS web modules
installWebQuery | Set up imageHTS web modules
makeCellHTS | Segmentation of yeast cells and ring-shaped objects.
parseDCF | Parse a DCF file
parseImageConf | Instantiate an imageHTS object
popCellPicker | Pop up imageHTS web modules
popWebQuery | Pop up imageHTS web modules
predictCellLabels | Learn, classify and predict cell labels.
prw2uname | Convert and parse well unique names
readHTS | Get access to screen data files
readLearnTS | Learn, classify and predict cell labels.
rowcol2well | Convert and parse well unique names
segmentATH | Segmentation and quantification of cells stained for DNA, actin and tubulin.
segmentRing | Segmentation of yeast cells and ring-shaped objects.
segmentWells | Segment cells in well images
segmentYeastBF | Segmentation of yeast cells and ring-shaped objects.
summarizeWells | Summarize cell features
uname2prw | Convert and parse well unique names
well2rowcol | Convert and parse well unique names
well2wellid | Convert and parse well unique names
zprime | Compute the Z'-factor quality score