Package: maigesPack
Version: 1.22.0
Title: Functions to handle cDNA microarray data, including several
        methods of data analysis
Author: Gustavo H. Esteves <gesteves@gmail.com>, with contributions from
	Roberto Hirata Jr <hirata@ime.usp.br>, E. Jordao Neves
 	<neves@ime.usp.br>, Elier B. Cristo <elier@ime.usp.br>, Ana C. Simoes
	<anakqui@ime.usp.br> and Lucas Fahham <fahham@linux.ime.usp.br>	
Maintainer: Gustavo H. Esteves <gesteves@gmail.com>
Depends: R (>= 2.10), convert, graph, limma, marray, methods
Suggests: amap, annotate, class, e1071, MASS, multtest, OLIN, R2HTML,
        rgl, som
Description: This package uses functions of various other packages together with
	other functions  in a coordinated way to handle and analyse cDNA
	microarray data
License: GPL (>= 2)
LazyLoad: yes
biocViews: Microarray, TwoChannel, Preprocessing, ConnectTools,
        DifferentialExpression, Clustering, Classification,
        GraphsAndNetworks
Collate: AllClasses.R AllGenerics.R print-methods.R summary-methods.R
        show-methods.R dim-methods.R indexing-methods.R
        coerce-methods.R plot-methods.R image-methods.R
        boxplot-methods.R calcA-methods.R calcW-methods.R
        getLabels-methods.R activeMod.R activeModScoreHTML.R
        activeNet.R activeNetScoreHTML.R addGeneGrps.R addPaths.R
        bootstrapCor.R bootstrapMI.R bootstrapT.R classifyKNN.R
        classifyKNNsc.R classifyLDA.R classifyLDAsc.R classifySVM.R
        classifySVMsc.R colors.R compCorr.R contrastsFitM.R
        createMaigesRaw.R createTDMS.R deGenes2by2BootT.R
        deGenes2by2Ttest.R deGenes2by2Wilcox.R deGenesANOVA.R
        designANOVA.R heatmapsM.R hierMde.R hierM.R kmeansMde.R
        kmeansM.R loadData.R MI.R normLoc.R normOLIN.R normRepLoess.R
        normScaleLimma.R normScaleMarray.R plotGenePair.R relNet2TGF.R
        relNetworkB.R relNetworkM.R robustCorr.R selSpots.R somMde.R
        somM.R summarizeReplicates.R tableClass.R tablesDE.R
URL: http://www.maiges.org/en/software/
Packaged: 2012-10-02 06:44:52 UTC; biocbuild
Built: R 2.15.1; i386-pc-mingw32; 2012-10-02 13:05:15 UTC; windows
Archs: i386, x64
