Package: sagenhaft
Version: 1.28.0
Date: 2007-04-10
Title: Collection of functions for reading and comparing SAGE libraries
Author: Tim Beissbarth <beissbarth@wehi.edu.au>, with contributions
        from Gordon Smyth <smyth@wehi.edu.au> and Lavinia Hyde
        <hyde@wehi.edu.au>.
Reference: Beissbarth T, Hyde L, Smyth GK, Job C, Boon WM, Tan SS,
        Scott HS, Speed TP: Statistical modeling of sequencing errors
        in SAGE libraries, Bioinformatics, 2004 20(Suppl. 1):i31-9.
Maintainer: Tim Beissbarth <beissbarth@wehi.edu.au>
Depends: R (>= 2.10), SparseM (>= 0.73), methods
Imports: graphics, methods, SparseM, stats, utils
Description: This package implements several functions useful for
        analysis of gene expression data by sequencing tags as done in
	SAGE (Serial Analysis of Gene Expressen) data,
        i.e. extraction of a SAGE library from sequence files,
        sequence error correction, library comparison. Sequencing error 
	correction is implementing using an Expectation Maximization Algorithm
	based on a Mixture Model of tag counts.
biocViews: SAGE
License: GPL (>= 2)
URL: http://tagcalling.mbgproject.org
Packaged: 2012-10-02 06:27:57 UTC; biocbuild
Built: R 2.15.1; ; 2012-10-02 13:19:55 UTC; windows
