# Gene set enrichment analysis for ChIP-seq data

## Documentation for package ‘chipenrich.data’ version 0.99.4

- DESCRIPTION file.
- Package NEWS.

## Help Pages

C E G L M P T

chipenrich.data-package | Datasets required for the chipenrich package

## -- C --

chipenrich.data | Datasets required for the chipenrich package

## -- E --

example_datasets | List ChIP-seq peak example datasets

## -- G --

genes.hsa | genes.hsa
genes.mmu | genes.mmu
genes.rno | genes.rno
GeneSet-class | Class '"GeneSet"'
geneset.biocarta_pathway.hsa | geneset.biocarta_pathway.hsa
geneset.biocarta_pathway.mmu | geneset.biocarta_pathway.mmu
geneset.biocarta_pathway.rno | geneset.biocarta_pathway.rno
geneset.cytoband.hsa | geneset.cytoband.hsa
geneset.drug_bank.hsa | geneset.drug_bank.hsa
geneset.drug_bank.mmu | geneset.drug_bank.mmu
geneset.drug_bank.rno | geneset.drug_bank.rno
geneset.ehmn_pathway_gene.hsa | geneset.ehmn_pathway_gene.hsa
geneset.ehmn_pathway_gene.mmu | geneset.ehmn_pathway_gene.mmu
geneset.ehmn_pathway_gene.rno | geneset.ehmn_pathway_gene.rno
geneset.gene_expression.hsa | geneset.gene_expression.hsa
geneset.gene_expression.mmu | geneset.gene_expression.mmu
geneset.GOBP.hsa | geneset.GOBP.hsa
geneset.GOBP.mmu | geneset.GOBP.mmu
geneset.GOBP.rno | geneset.GOBP.rno
geneset.GOCC.hsa | geneset.GOCC.hsa
geneset.GOCC.mmu | geneset.GOCC.mmu
geneset.GOCC.rno | geneset.GOCC.rno
geneset.GOMF.hsa | geneset.GOMF.hsa
geneset.GOMF.mmu | geneset.GOMF.mmu
geneset.GOMF.rno | geneset.GOMF.rno
geneset.kegg_pathway.hsa | geneset.kegg_pathway.hsa
geneset.kegg_pathway.mmu | geneset.kegg_pathway.mmu
geneset.kegg_pathway.rno | geneset.kegg_pathway.rno
geneset.mesh.hsa | geneset.mesh.hsa
geneset.mesh.mmu | geneset.mesh.mmu
geneset.mesh.rno | geneset.mesh.rno
geneset.metabolite.hsa | geneset.metabolite.hsa
geneset.metabolite.mmu | geneset.metabolite.mmu
geneset.metabolite.rno | geneset.metabolite.rno
geneset.mirbase.hsa | geneset.mirbase.hsa
geneset.mirbase.mmu | geneset.mirbase.mmu
geneset.mirbase.rno | geneset.mirbase.rno
geneset.omim.hsa | geneset.omim.hsa
geneset.omim.mmu | geneset.omim.mmu
geneset.omim.rno | geneset.omim.rno
geneset.panther_pathway.hsa | geneset.panther_pathway.hsa
geneset.panther_pathway.mmu | geneset.panther_pathway.mmu
geneset.panther_pathway.rno | geneset.panther_pathway.rno
geneset.pfam.hsa | geneset.pfam.hsa
geneset.pfam.mmu | geneset.pfam.mmu
geneset.pfam.rno | geneset.pfam.rno
geneset.protein_interaction_mimi.hsa | geneset.protein_interaction_mimi.hsa
geneset.protein_interaction_mimi.mmu | geneset.protein_interaction_mimi.mmu
geneset.protein_interaction_mimi.rno | geneset.protein_interaction_mimi.rno
geneset.transcription_factors.hsa | geneset.transcription_factors.hsa
geneset.transcription_factors.mmu | geneset.transcription_factors.mmu
geneset.transcription_factors.rno | geneset.transcription_factors.rno

## -- L --

locusdef.hg19.1kb | locusdef.hg19.1kb
locusdef.hg19.5kb | locusdef.hg19.5kb
locusdef.hg19.exon | locusdef.hg19.exon
locusdef.hg19.nearest_gene | locusdef.hg19.nearest_gene
locusdef.hg19.nearest_tss | locusdef.hg19.nearest_tss
locusdef.mm10.1kb | locusdef.mm10.1kb
locusdef.mm10.5kb | locusdef.mm10.5kb
locusdef.mm10.nearest_tss | locusdef.mm10.nearest_tss
locusdef.mm9.1kb | locusdef.mm9.1kb
locusdef.mm9.5kb | locusdef.mm9.5kb
locusdef.mm9.exon | locusdef.mm9.exon
locusdef.mm9.nearest_gene | locusdef.mm9.nearest_gene
locusdef.mm9.nearest_tss | locusdef.mm9.nearest_tss
locusdef.rn4.1kb | locusdef.rn4.1kb
locusdef.rn4.5kb | locusdef.rn4.5kb
locusdef.rn4.nearest_gene | locusdef.rn4.nearest_gene
locusdef.rn4.nearest_tss | locusdef.rn4.nearest_tss
LocusDefinition-class | Class '"LocusDefinition"'

## -- M --

mappa.hg19.1kb.100mer | mappa.hg19.1kb.100mer
mappa.hg19.1kb.24mer | mappa.hg19.1kb.24mer
mappa.hg19.1kb.36mer | mappa.hg19.1kb.36mer
mappa.hg19.1kb.40mer | mappa.hg19.1kb.40mer
mappa.hg19.1kb.50mer | mappa.hg19.1kb.50mer
mappa.hg19.1kb.75mer | mappa.hg19.1kb.75mer
mappa.hg19.5kb.100mer | mappa.hg19.5kb.100mer
mappa.hg19.5kb.24mer | mappa.hg19.5kb.24mer
mappa.hg19.5kb.36mer | mappa.hg19.5kb.36mer
mappa.hg19.5kb.40mer | mappa.hg19.5kb.40mer
mappa.hg19.5kb.50mer | mappa.hg19.5kb.50mer
mappa.hg19.5kb.75mer | mappa.hg19.5kb.75mer
mappa.hg19.exon.100mer | mappa.hg19.exon.100mer
mappa.hg19.exon.24mer | mappa.hg19.exon.24mer
mappa.hg19.exon.36mer | mappa.hg19.exon.36mer
mappa.hg19.exon.40mer | mappa.hg19.exon.40mer
mappa.hg19.exon.50mer | mappa.hg19.exon.50mer
mappa.hg19.exon.75mer | mappa.hg19.exon.75mer
mappa.hg19.nearest_gene.100mer | mappa.hg19.nearest_gene.100mer
mappa.hg19.nearest_gene.24mer | mappa.hg19.nearest_gene.24mer
mappa.hg19.nearest_gene.36mer | mappa.hg19.nearest_gene.36mer
mappa.hg19.nearest_gene.40mer | mappa.hg19.nearest_gene.40mer
mappa.hg19.nearest_gene.50mer | mappa.hg19.nearest_gene.50mer
mappa.hg19.nearest_gene.75mer | mappa.hg19.nearest_gene.75mer
mappa.hg19.nearest_tss.100mer | mappa.hg19.nearest_tss.100mer
mappa.hg19.nearest_tss.24mer | mappa.hg19.nearest_tss.24mer
mappa.hg19.nearest_tss.36mer | mappa.hg19.nearest_tss.36mer
mappa.hg19.nearest_tss.40mer | mappa.hg19.nearest_tss.40mer
mappa.hg19.nearest_tss.50mer | mappa.hg19.nearest_tss.50mer
mappa.hg19.nearest_tss.75mer | mappa.hg19.nearest_tss.75mer
mappa.mm9.1kb.100mer | mappa.mm9.1kb.100mer
mappa.mm9.1kb.36mer | mappa.mm9.1kb.36mer
mappa.mm9.1kb.40mer | mappa.mm9.1kb.40mer
mappa.mm9.1kb.50mer | mappa.mm9.1kb.50mer
mappa.mm9.1kb.75mer | mappa.mm9.1kb.75mer
mappa.mm9.5kb.100mer | mappa.mm9.5kb.100mer
mappa.mm9.5kb.36mer | mappa.mm9.5kb.36mer
mappa.mm9.5kb.40mer | mappa.mm9.5kb.40mer
mappa.mm9.5kb.50mer | mappa.mm9.5kb.50mer
mappa.mm9.5kb.75mer | mappa.mm9.5kb.75mer
mappa.mm9.exon.100mer | mappa.mm9.exon.100mer
mappa.mm9.exon.36mer | mappa.mm9.exon.36mer
mappa.mm9.exon.40mer | mappa.mm9.exon.40mer
mappa.mm9.exon.50mer | mappa.mm9.exon.50mer
mappa.mm9.exon.75mer | mappa.mm9.exon.75mer
mappa.mm9.nearest_gene.100mer | mappa.mm9.nearest_gene.100mer
mappa.mm9.nearest_gene.36mer | mappa.mm9.nearest_gene.36mer
mappa.mm9.nearest_gene.40mer | mappa.mm9.nearest_gene.40mer
mappa.mm9.nearest_gene.50mer | mappa.mm9.nearest_gene.50mer
mappa.mm9.nearest_gene.75mer | mappa.mm9.nearest_gene.75mer
mappa.mm9.nearest_tss.100mer | mappa.mm9.nearest_tss.100mer
mappa.mm9.nearest_tss.36mer | mappa.mm9.nearest_tss.36mer
mappa.mm9.nearest_tss.40mer | mappa.mm9.nearest_tss.40mer
mappa.mm9.nearest_tss.50mer | mappa.mm9.nearest_tss.50mer
mappa.mm9.nearest_tss.75mer | mappa.mm9.nearest_tss.75mer

## -- P --

peaks_E2F4 | ChIP-seq Peaks for the E2F4 Transcription Factor

## -- T --

tss.hg19 | tss.hg19
tss.mm10 | tss.mm10
tss.mm9 | tss.mm9
tss.rn4 | tss.rn4