Master regulators of FGFR2 signalling and breast cancer risk.


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Documentation for package ‘Fletcher2013b’ version 0.99.3

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chromlen Miscellaneous datasets.
consensus Miscellaneous datasets.
ESR1bdsites Miscellaneous datasets.
fimoESR1 Miscellaneous datasets.
fimoFOXA1 Miscellaneous datasets.
fimoGATA3 Miscellaneous datasets.
Fletcher2013b A pipeline to reproduce results for Fletcher et al. 2013.
Fletcher2013gsea.regulons Supplementary GSEA analyses to reproduce results for Fletcher et al. 2013.
Fletcher2013mra.agreement.cohort1 Supplementary MRA analyses to reproduce results for Fletcher et al. 2013.
Fletcher2013mra.agreement.exp1 Supplementary MRA analyses to reproduce results for Fletcher et al. 2013.
Fletcher2013mra.agreement.exp2 Supplementary MRA analyses to reproduce results for Fletcher et al. 2013.
Fletcher2013mra.agreement.exp3 Supplementary MRA analyses to reproduce results for Fletcher et al. 2013.
Fletcher2013mra.consensus Supplementary MRA analyses to reproduce results for Fletcher et al. 2013.
Fletcher2013mra.heatmap1 Supplementary MRA analyses to reproduce results for Fletcher et al. 2013.
Fletcher2013mra.heatmap2 Supplementary MRA analyses to reproduce results for Fletcher et al. 2013.
Fletcher2013pipeline.chipseq A pipeline to reproduce results for Fletcher et al. 2013.
Fletcher2013pipeline.consensusnet A pipeline to reproduce results for Fletcher et al. 2013.
Fletcher2013pipeline.enrichmap A pipeline to reproduce results for Fletcher et al. 2013.
Fletcher2013pipeline.masters A pipeline to reproduce results for Fletcher et al. 2013.
Fletcher2013pipeline.motifs A pipeline to reproduce results for Fletcher et al. 2013.
Fletcher2013pipeline.mra1st A pipeline to reproduce results for Fletcher et al. 2013.
Fletcher2013pipeline.mra2nd A pipeline to reproduce results for Fletcher et al. 2013.
Fletcher2013pipeline.mraNormals A pipeline to reproduce results for Fletcher et al. 2013.
Fletcher2013pipeline.mraTALL A pipeline to reproduce results for Fletcher et al. 2013.
Fletcher2013pipeline.siRNA A pipeline to reproduce results for Fletcher et al. 2013.
Fletcher2013pipeline.synergyShadow A pipeline to reproduce results for Fletcher et al. 2013.
FOXA1bdsites Miscellaneous datasets.
GATA3bdsites Miscellaneous datasets.
metaPCNA Miscellaneous datasets.
miscellaneous Miscellaneous datasets.
randsites Miscellaneous datasets.
risksites Miscellaneous datasets.
rtni1st Transcriptional network datasets.
rtni2nd Transcriptional network datasets.
rtniIDs Transcriptional network datasets.
rtniNormals Transcriptional network datasets.
rtniTALL Transcriptional network datasets.
siRNA Dataset from siRNA experiments used to reproduce results in Fletcher et al., 2012.
SPDEFbdsites Miscellaneous datasets.
tfs Miscellaneous datasets.