Package: BiSeq
Type: Package
Title: Processing and analyzing bisulfite sequencing data
Version: 1.4.2
Date: 2014-05-06
Author: Katja Hebestreit, Hans-Ulrich Klein
Maintainer: Katja Hebestreit <katjah@stanford.edu>
Depends: R (>= 2.15.2), methods, IRanges (>= 1.17.24), GenomicRanges,
        Formula
Imports: methods, BiocGenerics, Biobase, IRanges, GenomicRanges,
        rtracklayer, parallel, betareg, lokern, Formula, globaltest
Description: The BiSeq package provides useful classes and functions to
        handle and analyze targeted bisulfite sequencing (BS) data such
        as reduced-representation bisulfite sequencing (RRBS) data. In
        particular, it implements an algorithm to detect differentially
        methylated regions (DMRs). The package takes already aligned BS
        data from one or multiple samples.
License: LGPL-3
biocViews: Genetics, Sequencing, MethylSeq, DNAMethylation
Packaged: 2014-05-08 06:50:24 UTC; biocbuild
Built: R 3.1.0; ; 2014-05-08 11:56:41 UTC; unix
