# Functional gene networks derived from biological enrichment analyses

## Documentation for package ‘FGNet’ version 2.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

FGNet-package | Functional gene networks derived from biological enrichment analyses
adjMatrix | Transforms into group-genes incidence matrices.
FGNet | Functional gene networks derived from biological enrichment analyses
functionalNetwork | Create and plot the functional gene network.
getResults_david | Get results from an analysis with David.
getResults_gtLinker | Get results from GeneTerm Linker.
getTerms | Get terms in the metagroups/clusters.
intersectionNetwork | Metagroup/Cluster intersection network.
plotMetagroupsDistance | Plots distances between metagroups.
query_david | Query DAVID.
query_gtLinker | Query GeneTerm Linker
report_david | Generate the Functional Network report for a gene list performing the functional analysis through GeneTerm Linker or DAVID.
report_gtLinker | Generate the Functional Network report for a gene list performing the functional analysis through GeneTerm Linker or DAVID.
toMatrix | Transforms into group-genes incidence matrices.