Likelihood Ratio Test Statistic (E2)
This options provides the analysis using the E2 test statistics based on p-values obtained from its exact distribution. The provided p-values adjustment methods are BH, BY, Holm, SidakSS, Sidak SD, Holm, Hochberg and Bonferroni. Based on the specified adjustment methods and overall significant level, the list of significant genes along isotonic means difference, test statistic value, raw and adjusted $-values, will be produced.
Analysis > Likelihood Ratio Test (E2)
Screenshot of the main dialog box of Likelihood Ratio Test (E2) analysis

Home
Screenshot of the list of significant genes
Plots
After the raw p-values and adjusted p-values are calculated, there are three plot that can be produced. After choose the option and click the Produce plots button the plot will be displayed.
Screenshot of the plot of Fold change vs. E2