Package: CNVrd2
Type: Package
Title: CNVrd2: a read depth-based method to detect and genotype complex
        common copy number variants from next generation sequencing
        data.
Version: 1.2.0
Date: 2014-03-28
Author: Hoang Tan Nguyen, Tony R Merriman and MA Black
Depends: R (>= 3.0.0), DNAcopy, methods, Rsamtools, VariantAnnotation,
        parallel, rjags, ggplot2, gridExtra
VignetteBuilder: knitr
Suggests: knitr
Maintainer: Hoang Tan Nguyen <hoangtannguyenvn@gmail.com>
Description: CNVrd2 uses next-generation sequencing data to measure human gene copy number for multiple samples,
	indentify SNPs tagging copy number variants and detect copy
        number polymorphic genomic regions.
License: GPL-2
Imports: IRanges
biocViews: High Throughput Sequencing, CNV, SNP.
Collate: AllClasses.R AllGenerics.R countReadInWindow.R
        segmentSamples.R segmentSamplesUsingPopInformation.R
        identifyPolymorphicRegion.R plotPolymorphicRegion.R
        emnormalCNV.R groupCNVs.R searchGroupCNVs.R groupBayesianCNVs.R
        plotCNVrd2.R calculateLDSNPandCNV.R
URL: https://github.com/hoangtn/CNVrd2
Packaged: 2014-05-02 08:50:53 UTC; biocbuild
Built: R 3.1.0; ; 2014-05-02 15:56:04 UTC; unix
