Package: compcodeR
Type: Package
Title: RNAseq data simulation, differential expression analysis and
        performance comparison of differential expression methods
Version: 1.0.0
Author: Charlotte Soneson
Maintainer: Charlotte Soneson <Charlotte.Soneson@isb-sib.ch>
Description: This package provides extensive functionality for
        comparing results obtained by different methods for
        differential expression analysis of RNAseq data. It also
        contains functions for simulating count data and interfaces to
        several packages for performing the differential expression
        analysis.
Depends: R (>= 3.0.2), sm
Imports: tcltk, knitr (>= 1.2), markdown, ROCR, lattice (>= 0.16),
        gplots, gtools, gdata, caTools, grid, KernSmooth, MASS,
        ggplot2, stringr, modeest, edgeR, limma, vioplot, methods
Suggests: BiocStyle, EBSeq, DESeq, DESeq2 (>= 1.1.31), baySeq (>=
        1.16.0), genefilter, NOISeq, DSS, TCC, samr, NBPSeq, HTSDiff
Enhances: rpanel
License: GPL (>= 2)
VignetteBuilder: knitr
biocViews: RNASeq, DifferentialExpression
Packaged: 2014-05-02 09:06:31 UTC; biocbuild
Built: R 3.1.0; ; 2014-05-02 15:56:22 UTC; unix
