addLegend	addLegend
addLegend_v1	addLegend_v1
addMarkers	addMarkers
chi2	chi2-methods
chi2,matrix,matrix-method	chi2-methods
chi2,matrix,numeric-method	chi2-methods
chi2,numeric,matrix-method	chi2-methods
chi2,numeric,numeric-method	chi2-methods
chi2-methods	chi2-methods
class:GenRegRes	GenRegRes-class
empPvalues	empPvalues
exprsToRatios	exprsToRatios-methods
exprsToRatios,MSnSet-method	exprsToRatios-methods
exprsToRatios-methods	exprsToRatios-methods
f1Count	GenRegRes-class
f1Count,GenRegRes-method	GenRegRes-class
GenRegRes	GenRegRes-class
GenRegRes-class	GenRegRes-class
getF1Scores	GenRegRes-class
getF1Scores,GenRegRes-method	GenRegRes-class
getMarkers	getMarkers
getParams	GenRegRes-class
getParams,ClustRegRes-method	undocumented
getParams,GenRegRes-method	GenRegRes-class
getPredictions	getPredictions
getRegularisedParams	GenRegRes-class
getRegularisedParams,GenRegRes-method	GenRegRes-class
getRegularizedParams	GenRegRes-class
getRegularizedParams,GenRegRes-method	GenRegRes-class
getSeed	GenRegRes-class
getSeed,GenRegRes-method	GenRegRes-class
getStockcol	getStockcol
getStockpch	getStockcol
getUnknowncol	getStockcol
getUnknownpch	getStockcol
getWarnings	GenRegRes-class
getWarnings,GenRegRes-method	GenRegRes-class
knnClassification	knnClassification
knnOptimisation	knnOptimisation
knnOptimization	knnOptimisation
knnPrediction	knnClassification
knnRegularisation	knnOptimisation
ksvmClassification	ksvmClassification
ksvmOptimisation	ksvmOptimisation
ksvmOptimization	ksvmOptimisation
ksvmPrediction	ksvmClassification
ksvmRegularisation	ksvmOptimisation
levelPlot	GenRegRes-class
levelPlot,ClustRegRes-method	undocumented
levelPlot,GenRegRes-method	GenRegRes-class
lopims	lopims
makeNaData	makeNaData
makeNaData2	makeNaData
markerSet	markerSet
minClassScore	minClassScore
minMarkers	minMarkers
MLearn,formula,MSnSet,clusteringSchema,missing-method	MLearn-methods
MLearn,formula,MSnSet,learnerSchema,numeric-method	MLearn-methods
MLearn,formula,MSnSet,learnerSchema,xvalSpec-method	MLearn-methods
MLearnMSnSet	MLearn-methods
MSnSetMLean	MLearn-methods
nbClassification	nbClassification
nbOptimisation	nbOptimisation
nbOptimization	nbOptimisation
nbPrediction	nbClassification
nbRegularisation	nbOptimisation
nnetClassification	nnetClassification
nnetOptimisation	nnetOptimisation
nnetOptimization	nnetOptimisation
nnetPrediction	nnetClassification
nnetRegularisation	nnetOptimisation
perTurboClassification	perTurboClassification
perTurboOptimisation	perTurboOptimisation
perTurboOptimization	perTurboOptimisation
phenoDisco	phenoDisco
plot,ClustRegRes,missing-method	undocumented
plot,GenRegRes,missing-method	GenRegRes-class
plot2D	plot2D
plot2D_v1	plot2D_v1
plotDist	plotDist
plsdaClassification	plsdaClassification
plsdaOptimisation	plsdaOptimisation
plsdaOptimization	plsdaOptimisation
plsdaPrediction	plsdaClassification
plsdaRegularisation	plsdaOptimisation
pRolocmarkers	pRolocmarkers
rfClassification	rfClassification
rfOptimisation	rfOptimisation
rfOptimization	rfOptimisation
rfPrediction	rfClassification
rfRegularisation	rfOptimisation
setStockcol	getStockcol
setStockpch	getStockcol
setUnknowncol	getStockcol
setUnknownpch	getStockcol
show,ClustRegRes-method	undocumented
show,GenRegRes-method	GenRegRes-class
svmClassification	svmClassification
svmOptimisation	svmOptimisation
svmOptimization	svmOptimisation
svmPrediction	svmClassification
svmRegularisation	svmOptimisation
testMarkers	testMarkers
undocumented	undocumented
unknownSet	markerSet
whichNA	makeNaData
