# Easy extraction of individual probes in Affymetrix tiling arrays

## Documentation for package ‘AffyTiling’ version 1.22.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

AnalyzeTilingCelFiles | Background correction and RNA normalization for CEL files from an Affymetrix tiling array.
AssociateWithGenes | Associates a vector of probe positions with the nearest input transcription start site.
AssociateWithInterval | Returns index of association between a probe and a set of genomic intervals.
Data used to demonstrate AffyTiling. | Sample intensities for human promoter tiling array.
Einter | Sample intensities for human promoter tiling array.
gene positions | Position of known genes in the first 2 Mb of human chromosome 1-3.
intensities | Sample intensities for human promoter tiling array.
KG | Position of known genes in the first 2 Mb of human chromosome 1-3.
KnownGenes | Sample intensities for human promoter tiling array.
parseBPMAP | Returns information from a BPMAP file for select probes in an Affymetrix tiling array.
TilingCelFiles2Probesets | Background correction and RNA normalization for CEL files from an Affymetrix tiling array.