# Generated by roxygen2 (4.0.0): do not edit by hand

S3method(CellCounts,COMPASSContainer)
S3method(CellCounts,default)
S3method(FunctionalityScore,COMPASSResult)
S3method(FunctionalityScore,default)
S3method(PolyfunctionalityScore,COMPASSResult)
S3method(PolyfunctionalityScore,default)
S3method(UniqueCombinations,COMPASSContainer)
S3method(UniqueCombinations,default)
S3method(melt_,data.frame)
S3method(melt_,matrix)
S3method(merge,COMPASSContainer)
S3method(plot,COMPASSResult)
S3method(print,COMPASSContainer)
S3method(print,COMPASSResult)
S3method(subset,COMPASSContainer)
S3method(summary,COMPASSContainer)
S3method(summary,COMPASSResult)
export("COMPASSDescription<-")
export(COMPASS)
export(COMPASSContainer)
export(COMPASSContainerFromGatingSet)
export(COMPASSDescription)
export(CellCounts)
export(Combinations)
export(FunctionalityScore)
export(GetThresholdedIntensities)
export(PolyfunctionalityScore)
export(Posterior)
export(PosteriorDiff)
export(PosteriorLogDiff)
export(PosteriorPs)
export(PosteriorPu)
export(TotalCellCounts)
export(UniqueCombinations)
export(pheatmap)
export(plot2)
export(shinyCOMPASS)
export(shinyCOMPASSDeps)
export(transpose_list)
import(data.table)
import(grid)
importFrom(RColorBrewer,brewer.pal)
importFrom(Rcpp,evalCpp)
importFrom(abind,abind)
importFrom(clue,solve_LSAP)
importFrom(grDevices,colorRampPalette)
importFrom(knitr,kable)
importFrom(plyr,.)
importFrom(plyr,ddply)
importFrom(plyr,laply)
importFrom(plyr,ldply)
importFrom(plyr,rbind.fill)
importFrom(scales,div_gradient_pal)
importFrom(utils,adist)
importFrom(utils,globalVariables)
useDynLib(COMPASS, .registration=TRUE)
