Package: DNaseR
Version: 1.2.0
Date: 2013-09-12
Type: Package
Title: DNase I footprinting analysis of DNase-seq data
Author: Pedro Madrigal <pm12@sanger.ac.uk>
Description: Strand-specific digital genomic footprinting in DNase-seq data. The cumulative Skellam distribution function (package 'skellam') is used to detect significant normalized count differences of opposed sign at each DNA strand. This is done in order to determine the protein-binding footprint flanks. Preprocessing of the mapped reads is recommended before running DNaseR (e.g., quality checking and removal of sequence-specific bias).
Depends: R (>= 2.10.0), IRanges
Maintainer: Pedro Madrigal <pm12@sanger.ac.uk>
Imports: Rsamtools, GenomicRanges
Suggests: RUnit, BiocGenerics
License: GPL-2 + file LICENSE
biocViews: Transcription, Genetics
LazyLoad: yes
LazyData: yes
Packaged: 2014-04-12 10:31:54 UTC; biocbuild
Built: R 3.1.0; ; 2014-04-12 13:01:03 UTC; windows
