assessment-class	experiment-class
classifyNewSamples	classifyNewSamples-methods
classifyNewSamples,assessment-method	classifyNewSamples-methods
classifyNewSamples-methods	classifyNewSamples-methods
featureSelectionOptions-class	featureSelectionOptions-class
finalClassifier-class	finalClassifier-class
findFinalClassifier	findFinalClassifier-methods
findFinalClassifier,assessment-method	findFinalClassifier-methods
findFinalClassifier-methods	findFinalClassifier-methods
geneSubsets-class	geneSubsets-class
getClassifierName	experiment-class
getClassifierName,assessment-method	experiment-class
getClassifierName<-	experiment-class
getClassifierName<-,assessment-method	experiment-class
getDataset	getDataset-methods
getDataset,assessment-method	getDataset-methods
getDataset-methods	getDataset-methods
getDataset<-	setDataset-methods
getDataset<-,assessment-method	setDataset-methods
getDataset<--methods	setDataset-methods
getFeatureSelectionMethod,assessment-method	experiment-class
getFeatureSelectionOptions	getFeatureSelectionOptions-methods
getFeatureSelectionOptions,assessment-method	getFeatureSelectionOptions-methods
getFeatureSelectionOptions-methods	getFeatureSelectionOptions-methods
getFeatureSelectionOptions<-	setFeatureSelectionOptions-methods
getFeatureSelectionOptions<-,assessment-method	setFeatureSelectionOptions-methods
getFeatureSelectionOptions<--methods	setFeatureSelectionOptions-methods
getFinalClassifier	getFinalClassifier
getFinalClassifier,assessment-method	getFinalClassifier
getFinalClassifier-methods	getFinalClassifier
getGenesFromBestToWorst	finalClassifier-class
getGenesFromBestToWorst,finalClassifier-method	finalClassifier-class
getMaxSubsetSize	geneSubsets-class
getMaxSubsetSize,geneSubsets-method	geneSubsets-class
getMaxSubsetSize<-	geneSubsets-class
getMaxSubsetSize<-,geneSubsets-method	geneSubsets-class
getModels	finalClassifier-class
getModels,finalClassifier-method	finalClassifier-class
getNoFolds1stLayer	experiment-class
getNoFolds1stLayer,assessment-method	experiment-class
getNoFolds1stLayer<-	experiment-class
getNoFolds1stLayer<-,assessment-method	experiment-class
getNoFolds2ndLayer	experiment-class
getNoFolds2ndLayer,assessment-method	experiment-class
getNoFolds2ndLayer<-	experiment-class
getNoFolds2ndLayer<-,assessment-method	experiment-class
getNoModels	geneSubsets-class
getNoModels,geneSubsets-method	geneSubsets-class
getNoOfRepeats	experiment-class
getNoOfRepeats,assessment-method	experiment-class
getNoOfRepeats<-	experiment-class
getNoOfRepeats<-,assessment-method	experiment-class
getNoThresholds	thresholds-class
getNoThresholds,thresholds-method	thresholds-class
getNoThresholds<-	thresholds-class
getNoThresholds<-,thresholds-method	thresholds-class
getOptionValues	thresholds-class
getOptionValues,featureSelectionOptions-method	featureSelectionOptions-class
getOptionValues,thresholds-method	thresholds-class
getOptionValues<-	thresholds-class
getOptionValues<-,thresholds-method	thresholds-class
getResult1LayerCV	experiment-class
getResult1LayerCV,assessment-method	experiment-class
getResult1LayerCV<-	experiment-class
getResult1LayerCV<-,assessment-method	experiment-class
getResult2LayerCV	experiment-class
getResult2LayerCV,assessment-method	experiment-class
getResult2LayerCV<-	experiment-class
getResult2LayerCV<-,assessment-method	experiment-class
getResults	getResults-methods
getResults,assessment-method	getResults-methods
getResults-methods	getResults-methods
getSpeed	geneSubsets-class
getSpeed,geneSubsets-method	geneSubsets-class
getSpeed<-	geneSubsets-class
getSpeed<-,geneSubsets-method	geneSubsets-class
getSubsetsSizes	geneSubsets-class
getSubsetsSizes,geneSubsets-method	geneSubsets-class
getSubsetsSizes<-	geneSubsets-class
getSubsetsSizes<-,geneSubsets-method	geneSubsets-class
getSvmKernel	experiment-class
getSvmKernel,assessment-method	experiment-class
getSvmKernel<-	experiment-class
getSvmKernel<-,assessment-method	experiment-class
getTypeFoldCreation	experiment-class
getTypeFoldCreation,assessment-method	experiment-class
getTypeFoldCreation<-	experiment-class
getTypeFoldCreation<-,assessment-method	experiment-class
initialize,assessment-method	initialize-methods
initialize,geneSubsets-method	initialize-methods
initialize,thresholds-method	initialize-methods
plotErrorsFoldTwoLayerCV	plotErrorsFoldTwoLayerCV-methods
plotErrorsFoldTwoLayerCV,assessment-method	plotErrorsFoldTwoLayerCV-methods
plotErrorsFoldTwoLayerCV-methods	plotErrorsFoldTwoLayerCV-methods
plotErrorsRepeatedOneLayerCV	plotErrorsRepeatedOneLayerCV
plotErrorsRepeatedOneLayerCV,assessment-method	plotErrorsRepeatedOneLayerCV
plotErrorsRepeatedOneLayerCV-methods	plotErrorsRepeatedOneLayerCV
plotErrorsSummaryOneLayerCV	plotErrorsSummaryOneLayerCV-methods
plotErrorsSummaryOneLayerCV,assessment-method	plotErrorsSummaryOneLayerCV-methods
plotErrorsSummaryOneLayerCV-methods	plotErrorsSummaryOneLayerCV-methods
rankedGenesImg	rankedGenesImg-methods
rankedGenesImg,assessment-method	rankedGenesImg-methods
rankedGenesImg-methods	rankedGenesImg-methods
runOneLayerExtCV	runOneLayerExtCV-methods
runOneLayerExtCV,assessment-method	runOneLayerExtCV-methods
runOneLayerExtCV-methods	runOneLayerExtCV-methods
runTwoLayerExtCV	runTwoLayerExtCV-methods
runTwoLayerExtCV,assessment-method	runTwoLayerExtCV-methods
runTwoLayerExtCV-methods	runTwoLayerExtCV-methods
show,assessment-method	show-methods
show,cvErrorRate-method	show-methods
show,cvErrorRate2ndLayer-method	show-methods
show,errorRate1stLayerCV-method	show-methods
show,errorRate2ndLayerCV-method	show-methods
show,finalClassifier-method	show-methods
show,frequencyGenes-method	show-methods
show,frequencyTopGenePerOneModel-method	show-methods
show,geneSubsets-method	show-methods
show,result2LayerCV-method	show-methods
show,resultRepeated1LayerCV-method	show-methods
show,resultRepeated2LayerCV-method	show-methods
show,resultSingle1LayerCV-method	show-methods
show,selectedGenes-method	show-methods
show,selectedGenes1stLayerCV-method	show-methods
show,selectedGenes2ndLayerCV-method	show-methods
show,selectedGenesPerOneOption-method	show-methods
show,thresholds-method	show-methods
thresholds-class	thresholds-class
vV70genes	vV70genes
