Package: VanillaICE
Version: 1.26.1
Title: A Hidden Markov Model for high throughput genotyping arrays
Author: Robert Scharpf <rscharpf@jhsph.edu>, Kevin Scharpf, and Ingo
        Ruczinski <ingo@jhsph.edu>
Maintainer: Robert Scharpf <rscharpf@jhsph.edu>
Date: Wed May 21 14:11:16 EDT 2014
Depends: R (>= 3.0.0)
Imports: stats, utils, methods, Biobase, oligoClasses (>=
        1.21.12),lattice, IRanges (>= 1.13.22), grid, msm, iterators,
        foreach, GenomicRanges, matrixStats
Suggests: genomewidesnp6Crlmm (>= 1.0.7), hapmapsnp6, RColorBrewer,
        genefilter, RSQLite, foreach, RUnit, pd.mapping50k.hind240,
        SNPchip (>= 2.5.7), doSNOW
Enhances: DNAcopy, crlmm (>= 1.17.14)
Description: Hidden Markov Models for characterizing chromosomal
        alterations in high throughput SNP arrays
License: LGPL-2
LazyLoad: yes
Collate: AllGenerics.R AllClasses.R methods-AssayData.R
        methods-CopyNumberSet.R methods-BeadStudioSet.R
        methods-GRanges.R methods-SnpSet.R methods-Vit.R
        methods-Viterbi.R methods-Viterbi2.R
        methods-BeadStudioSetList.R methods-oligoSetList.R
        hmm-methods.R deprecated-functions.R genotype-functions.R
        hmm-functions.R simulation-functions.R viterbi-functions.R
        functions.R generator-functions.R utils.R zzz.R
biocViews: CopyNumberVariants
## Local Variables:
## time-stamp-pattern: "8/Date: %3a %3b %2d %02H:%02M:%02S %Z %:y\n"
## End:
Packaged: 2014-05-22 11:13:15 UTC; biocbuild
Built: R 3.1.0; i386-w64-mingw32; 2014-05-22 19:07:33 UTC; windows
Archs: i386, x64
