bayesMixModel	bayesMixModel
bayesMixModel,numeric-method	bayesMixModel
chains	MixModelBayes-class
chains,MixModelBayes-method	MixModelBayes-class
ChIPseqSet-class	ChIPseqSet-class
chipVals	ChIPseqSet-class
chipVals,ChIPseqSet-method	ChIPseqSet-class
chipVals<-	ChIPseqSet-class
chipVals<-,ChIPseqSet,matrix-method	ChIPseqSet-class
classification	MixModel-class
classification,MixModel,character-method	MixModel-class
classification,MixModel,missing-method	MixModel-class
components	MixModel-class
components,MixModel-method	MixModel-class
convergence	MixModelML-class
convergence,MixModelML-method	MixModelML-class
dim,MixModel-method	MixModel-class
eSet	eSet
fpkm	fpkm
integrateData	integrateData
integrateData,ExpressionSet,ChIPseqSet,character,character-method	integrateData
integrateData,ExpressionSet,ChIPseqSet,character,missing-method	integrateData
integrateData,ExpressionSetIllumina,ChIPseqSet,character,character-method	integrateData
integrateData,ExpressionSetIllumina,ChIPseqSet,character,missing-method	integrateData
length,MixModel-method	MixModel-class
listClassificationMethods	MixModel-class
listClassificationMethods,MixModel-method	MixModel-class
mappedReads	mappedReads
matchProbeToPromoter	matchProbeToPromoter
matchProbeToPromoter,list,data.frame-method	matchProbeToPromoter
MixModel-class	MixModel-class
MixModelBayes-class	MixModelBayes-class
MixModelML-class	MixModelML-class
MixtureComponent-class	MixtureComponent-class
mlMixModel	mlMixModel
mlMixModel,numeric-method	mlMixModel
mmData	MixModel-class
mmData,MixModel-method	MixModel-class
normalizeChIP	normalizeChIP
normalizeChIP,ChIPseqSet,character-method	normalizeChIP
plotChains	plotChains
plotChains,MixModelBayes-method	plotChains
plotClassification	plotClassification
plotClassification,MixModel-method	plotClassification
plotComponents	plotComponents
plotComponents,MixModel-method	plotComponents
show,MixModel-method	MixModel-class
show,MixtureComponent-method	MixtureComponent-class
summarizeReads	summarizeReads
summarizeReads,GRangesList,GRangesList,character-method	summarizeReads
summarizeReads,GRangesList,GRangesList,missing-method	summarizeReads
summary,MixModel-method	MixModel-class
transToTSS	transToTSS
weights,MixModel-method	MixModel-class
