# Genome sequencing project metadata

## Documentation for package ‘genomes’ version 2.10.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

%like% | Pattern matching using wildcards
doublingTime | Doubling time for genome projects
efetch | Entrez database downloads
einfo | Entrez database information
elink | Entrez database links
ena | ENA browser REST URL
enaParse | Parse XML from ENA browser
esearch | Entrez database search
esummary | Entrez database summaries
euks | Eukaryotic genomes at NCBI
ftpList | List FTP files and directories
genomes | Introduction to the genomes package
genomes-lines | Add lines to a genomes plot
genomes-plot | Genome table plots by release date
genomes-summary | Genome table summaries
genomes-update | Genome table updates
genus | Extract the genus name
image2 | Display a matrix image
like | Pattern matching using wildcards
lines.genomes | Add lines to a genomes plot
month | Parse a date string
ncbiGenome | NCBI Genome links to the Nucleotide database
ncbiNucleotide | NCBI Nucleotide database
ncbiProject | NCBI BioProject database
ncbiPubmed | NCBI PubMed database
ncbiRelease | NCBI revision history
ncbiSubmit | NCBI submission dates
ncbiTaxonomy | NCBI taxonomy database
plot.genomes | Genome table plots by release date
plotby | Plot groups of genomes by release date
print.genomes | Print genome tables
proks | Prokaryotic genomes at NCBI
read.genemark | Read a GeneMark output file
read.gff | Read a GFF file from NCBI
read.glimmer | Read a Glimmer output file
read.ncbi.ftp | Read files from the NCBI genomes FTP
read.prodigal | Read a Prodigal gene finding output file
read.ptt | Read a NCBI protein or RNA feature table
species | Extract the species name
summary.genomes | Genome table summaries
table2 | Format and sort a contigency table
update.genomes | Genome table updates
virus | Virus genomes at NCBI
year | Parse a date string