# Piecewise Linear Regression Splines (PLRS) for the association between DNA copy number and gene expression

## Documentation for package ‘plrs’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

plrs-package | Piecewise Linear Regression Splines (PLRS) for the association between DNA copy number and mRNA expression
coef-method | Class 'plrs'
criteria | Compute AIC, AICC, BIC and OSAIC for a given 'plrs' model.
criteria-method | Compute AIC, AICC, BIC and OSAIC for a given 'plrs' model.
effects-method | Class 'plrs'
fitted-method | Class 'plrs'
knots-method | Class 'plrs'
model.matrix-method | Class 'plrs'
modify.conf | Modify the configuration (of calls) of the plrs model
neveCN17 | Copy number for chromosome 17.
neveGE17 | mRNA expression for chromosome 17.
plot,ANY | Plot functions in package 'plrs'
plot-method | Plot functions in package 'plrs'
plot-methods | Plot functions in package 'plrs'
plot.plrs | Plot functions in package 'plrs'
plrs | Fit a (constrained) piecewise linear regression spline
plrs,ANY | Fit a (constrained) piecewise linear regression spline
plrs-class | Class 'plrs'
plrs.cb | Uniform confidence bands (CB) for plrs models
plrs.select | Model selection
plrs.select,ANY | Model selection
plrs.select-class | Class 'plrs.select'
plrs.series | Fit plrs models for a series of arrays.
plrs.series-class | Class 'plrs.series'
plrs.sim | Simulation of a plrs model
plrs.test | Likelihood ratio test for a 'plrs' model
predict-method | Class 'plrs'
predict.plrs | Predict method for 'plrs' models
print-method | Class 'plrs'
print-method | Class 'plrs.select'
print-method | Class 'plrs.series'
residuals-method | Class 'plrs'
show-method | Class 'plrs'
show-method | Class 'plrs.select'
show-method | Class 'plrs.series'
summary-method | Class 'plrs'
summary-method | Class 'plrs.select'
summary-method | Class 'plrs.series'