Package: exomePeak
Type: Package
Title: exomePeak
Version: 1.2.0
Date: 2013-08-18
Author: Jia Meng <jia.meng@hotmail.com>
Maintainer: Jia Meng <jia.meng@hotmail.com>
Description: The package is developed for the analysis of
        affinity-based epitranscriptome shortgun sequencing data from
        MeRIP-seq (maA-seq). It was built on the basis of the exomePeak
        MATLAB package (Meng, Jia, et al. "Exome-based analysis for RNA
        epigenome sequencing data." Bioinformatics 29.12 (2013):
        1565-1567.) with new functions for differential analysis of two
        experimental conditions to unveil the dynamics in
        post-transcriptional regulation of the RNA methylome. The
        exomePeak R-package accepts and statistically supports multiple
        biological replicates, internally removes PCR artifacts and
        multi-mapping reads, outputs exome-based binding sites (RNA
        methylation sites) and detects differential
        post-transcriptional RNA modification sites between two
        experimental conditions in term of percentage rather the
        absolute amount. The package is still under active development,
        and we welcome all biology and computation scientist for all
        kinds of collaborations and communications. Please feel free to
        contact Dr. Jia Meng <jia.meng@hotmail.com> if you have any
        questions.
License: GPL-2
Depends: Rsamtools, GenomicFeatures (>= 1.0.0), rtracklayer
biocViews: Sequencing, MethylSeq, RNASeq
Packaged: 2014-04-12 07:54:02 UTC; biocbuild
