Package: DeSousa2013
Type: Package
Title: Poor prognosis colon cancer is defined by a molecularly distinct
        subtype and precursor lesion
Version: 1.0.0
Date: 2013-04-10
Author: Xin Wang <Xin.Wang@cruk.cam.ac.uk>
Maintainer: Xin Wang <Xin.Wang@cruk.cam.ac.uk>
Depends: R (>= 2.15),
Imports: affy, frma, frmaTools, hgu133plus2.db, hgu133plus2frmavecs,
        sva, rgl, ConsensusClusterPlus, cluster, siggenes, ROCR, pamr,
        survival, gplots, AnnotationDbi, Biobase
Description: This package reproduces the main pipeline to analyze the 
	AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature 
	Medicine in 2013. 
License: Artistic-2.0
biocViews: Bioinformatics
Collate: preprocessing.R consensusClustering.R featureSelection.R
        classification.R prognosis.R figures.R pipeline.R
LazyLoad: yes
Packaged: 2014-04-12 19:32:06 UTC; biocbuild
Built: R 3.1.0; ; 2014-04-12 20:33:16 UTC; windows
