# Tools for conducting enrichment analysis of MeSH

## Documentation for package ‘meshr’ version 1.28.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

meshr-package | Enrichment analysis for MeSH terms.
annotation-method | Class "MeSHHyperGParams"
annotation<--method | Class "MeSHHyperGParams"
category | A function to return the name of MeSH category
category-method | A function to return the name of MeSH category
category<- | A function to return the name of MeSH category
category<--method | A function to return the name of MeSH category
database | A function to return the name of MeSH database
database-method | A function to return the name of MeSH database
database<- | A function to return the name of MeSH database
database<--method | A function to return the name of MeSH database
geneid.cummeRbund | Test data of significant differentially expressed genes used in cummeRbund package.
geneIds-method | Class "MeSHHyperGParams"
geneIds<--method | Class "MeSHHyperGParams"
generic,category | A function to return the name of MeSH category
generic,database | A function to return the name of MeSH database
initialize-method | Class "MeSHHyperGParams"
makeValidParams-method | Class "MeSHHyperGParams"
meshAnnotation | Class "MeSHHyperGResult"
meshAnnotation-method | Class "MeSHHyperGResult"
meshCategory | Class "MeSHHyperGResult"
meshCategory-method | Class "MeSHHyperGResult"
meshDatabase | Class "MeSHHyperGResult"
meshDatabase-method | Class "MeSHHyperGResult"
MeSHHyperGParams-class | Class "MeSHHyperGParams"
MeSHHyperGResult-class | Class "MeSHHyperGResult"
meshHyperGTest | Hypergeometric Tests for MeSH term association
meshHyperGTest-method | Hypergeometric Tests for MeSH term association
meshIds | Class "MeSHHyperGResult"
meshIds-method | Class "MeSHHyperGResult"
meshr | Enrichment analysis for MeSH terms.
meshTerms | Class "MeSHHyperGResult"
meshTerms-method | Class "MeSHHyperGResult"
pAdjust | Class "MeSHHyperGParams"
pAdjust-method | Class "MeSHHyperGParams"
pAdjust<- | Class "MeSHHyperGParams"
pAdjust<--method | Class "MeSHHyperGParams"
PMCID | PUBMEDID - PMCID correspondence
pvalueCutoff-method | Class "MeSHHyperGParams"
pvalueCutoff<--method | Class "MeSHHyperGParams"
pvalues | Class "MeSHHyperGResult"
pvalues-method | Class "MeSHHyperGResult"
save.pdf | Class "MeSHHyperGResult"
save.pdf-method | Class "MeSHHyperGResult"
show | Class "MeSHHyperGResult"
show-method | Class "MeSHHyperGResult"
sig.geneid.cummeRbund | Test data of significant differentially expressed genes used in cummeRbund package.
summary | Class "MeSHHyperGResult"
summary-method | Class "MeSHHyperGResult"
universeGeneIds | Class "MeSHHyperGParams"
universeGeneIds-method | Class "MeSHHyperGParams"
universeGeneIds<- | Class "MeSHHyperGParams"
universeGeneIds<--method | Class "MeSHHyperGParams"