# An R Interface for Ribo Files

## Documentation for package ‘ribor’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

alias_hash | Ribo Class
alias_hash-method | Ribo Class
experiments | Ribo Class
experiments-method | Ribo Class
experiment_info | Ribo Class
experiment_info-method | Ribo Class
format_version | Ribo Class
format_version-method | Ribo Class
get_coverage | Retrieves the coverage data for a given transcript
get_experiments | Provides a list of experiments from a .ribo file
get_info | Get information about the .ribo file
get_internal_region_coordinates | Retrieves the region stop and start coordinates
get_internal_region_lengths | Returns the overall length of each region with UTR Junctions
get_length_distribution | Retrieves the length distribution of a given region
get_metadata | Retrieves the metadata of an experiment
get_metagene | Retrieves the metagene data from a .ribo file
get_original_region_coordinates | Retrieves the region stop and start coordinates
get_original_region_lengths | Returns the overall length of each region
get_reference_names | Retrieves a list of reference names
get_region_coordinates | Retrieves the region stop and start coordinates
get_region_counts | Retrieves the region counts from a .ribo file
get_region_lengths | Returns the overall length of each region with UTR Junctions
get_rnaseq | Information on the RNA-Seq data of the experiments, if any
get_tidy_metagene | Retrieves the metagene data in a tidy format
has_metadata | Ribo Class
has_metadata-method | Ribo Class
left_span | Ribo Class
left_span-method | Ribo Class
length_max | Ribo Class
length_max-method | Ribo Class
length_min | Ribo Class
length_min-method | Ribo Class
length_offset | Ribo Class
length_offset-method | Ribo Class
metagene_radius | Ribo Class
metagene_radius-method | Ribo Class
original_hash | Ribo Class
original_hash-method | Ribo Class
path | Ribo Class
path-method | Ribo Class
plot_length_distribution | Plots the length distribution
plot_metagene | Plots the metagene coverage data
plot_region_counts | Plots the region counts of UTR5, CDS, and UTR3
reference | Ribo Class
reference-method | Ribo Class
rename_default | Rename function for appris transcriptome naming convention
rename_transcripts | Renames the transcripts
Ribo | Ribo Class
Ribo-class | Ribo Class
ribor | ribor: A package for reading .ribo files
right_span | Ribo Class
right_span-method | Ribo Class
set_aliases | Set the aliases of a ribo object
show-method | Ribo Class
transcript_info | Ribo Class
transcript_info-method | Ribo Class