046a3bc85ad9aec19688a532b51a8cd8 *DESCRIPTION
1920f581d259fbd19b603469a4446f0f *INDEX
8c5b2544b100ff6982145032a4d564f0 *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
3fcf36468b79521a542f4929477a95b6 *Meta/hsearch.rds
2aa0db368ca1a1353ed811459b9fa68e *Meta/links.rds
8b140f757081492db22be2fde42277a1 *Meta/nsInfo.rds
5c54c94306c26f9ac4c63af2b22bb2a4 *Meta/package.rds
9b167ee39e36ecc3066997d44a1f7a61 *Meta/vignette.rds
ec3fbcb2574264dd4c88baaaa5e8f767 *NAMESPACE
9c9953987210432f0c5fadeb47b6adeb *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/AnnotationHubData
c0f5511b1933c30b5f07c76d6fc05667 *R/AnnotationHubData.rdb
883e202a67a5e66b4552d55a7ffd91bb *R/AnnotationHubData.rdx
0b8521b22cf361a749901d54db3c2119 *doc/IntroductionToAnnotationHubData.Rmd
d143c925a0ddcb85e6393dc6976b5008 *doc/IntroductionToAnnotationHubData.html
19a37ffc96666582848feb3cba2f3209 *doc/index.html
7a9c683265ae1d8ca8c5bd48f9d5efba *extdata/annotation_haemcode.tsv
982ed5d8d98151d4cced4b4f4c3f79d3 *extdata/badUCSCTracks/allBadTracks.rda
d8bc4b6266ba6d1a0f3a2c1090503611 *extdata/badUCSCTracks/allPossibleTracks.rda
d4e3ae6260e9fb0ab84d3631cb46442b *extdata/badUCSCTracks/genomeTrackTable.Rda
184c2be5d86719a53b8b09114790fb9c *extdata/haemCodeFileList.txt
b0ceff420c028bd9f9a0007bc4f5ea29 *extdata/inpDrosPsuedo.rda
3b6b6f0513fb652cd4acb78aa9ecb80c *help/AWS.html
a4c2cc3d1ee7c4cba7fb2f31e0349ced *help/AnIndex
cb4c8783dd60a7df81ca8c05cbbec625 *help/AnnotationHubData-package.html
7370839bb19e52bc49426d5deae19e39 *help/AnnotationHubData.rdb
954a0beaba5b2b3c3b5d7330050e4e23 *help/AnnotationHubData.rdx
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/AnnotationHubMetadata-class.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/AnnotationHubMetadata.html
cb4c8783dd60a7df81ca8c05cbbec625 *help/AnnotationHubRecipes-package.html
cb4c8783dd60a7df81ca8c05cbbec625 *help/AnnotationHubRecipes.html
a3720e9c27488a2cbfe239f299da6677 *help/EncodeImportPreparer-class.html
a3720e9c27488a2cbfe239f299da6677 *help/EncodeImportPreparer.html
a3720e9c27488a2cbfe239f299da6677 *help/EnsemblFastaImportPreparer-class.html
a3720e9c27488a2cbfe239f299da6677 *help/EnsemblFastaImportPreparer.html
a3720e9c27488a2cbfe239f299da6677 *help/EnsemblGtfImportPreparer-class.html
a3720e9c27488a2cbfe239f299da6677 *help/EnsemblGtfImportPreparer.html
a3720e9c27488a2cbfe239f299da6677 *help/Grasp2ImportPreparer-class.html
a3720e9c27488a2cbfe239f299da6677 *help/Grasp2ImportPreparer.html
a3720e9c27488a2cbfe239f299da6677 *help/HaemCodeImportPreparer-class.html
a3720e9c27488a2cbfe239f299da6677 *help/HaemCodeImportPreparer.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/HubMetadata-class.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/HubMetadata.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/HubMetadataFromJson.html
a3720e9c27488a2cbfe239f299da6677 *help/ImportPreparer-class.html
a3720e9c27488a2cbfe239f299da6677 *help/Inparanoid8ImportPreparer-class.html
a3720e9c27488a2cbfe239f299da6677 *help/Inparanoid8ImportPreparer.html
a3720e9c27488a2cbfe239f299da6677 *help/NCBIImportPreparer-class.html
a3720e9c27488a2cbfe239f299da6677 *help/NCBIImportPreparer.html
a3720e9c27488a2cbfe239f299da6677 *help/RefNetImportPreparer-class.html
a3720e9c27488a2cbfe239f299da6677 *help/RefNetImportPreparer.html
3b6b6f0513fb652cd4acb78aa9ecb80c *help/S3.html
a3720e9c27488a2cbfe239f299da6677 *help/UCSCChainPreparer-class.html
a3720e9c27488a2cbfe239f299da6677 *help/UCSCChainPreparer.html
a3720e9c27488a2cbfe239f299da6677 *help/UCSCTrackImportPreparer-class.html
a3720e9c27488a2cbfe239f299da6677 *help/UCSCTrackImportPreparer.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/ahmToJson.html
60ad7d4976ac5261631be3ceb8351f99 *help/aliases.rds
3b6b6f0513fb652cd4acb78aa9ecb80c *help/amazon.html
a3720e9c27488a2cbfe239f299da6677 *help/annotationHubRoot.html
7e622cbfe426b54083c09eda28731e8e *help/checkSpeciesTaxId.html
d41d8cd98f00b204e9800998ecf8427e *help/class
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/constructSeqInfo.html
a3720e9c27488a2cbfe239f299da6677 *help/dbSNPVCFImportPreparer-class.html
a3720e9c27488a2cbfe239f299da6677 *help/dbSNPVCFImportPreparer.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/deleteResources.html
93469a7aade0e6dd1b7d287a013b1897 *help/ensemblFastaToFaFile.html
93469a7aade0e6dd1b7d287a013b1897 *help/ensemblFastaToTwoBitFile.html
2ef47b5d0d7e3dc301e6a4d9a24c5f90 *help/flog.html
61444e7e6884543a1f9fec11bd563b21 *help/gencodeFastaToFaFile.html
a3720e9c27488a2cbfe239f299da6677 *help/getImportPreparer.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/getImportPreparerClasses.html
7e622cbfe426b54083c09eda28731e8e *help/getSpeciesList.html
7e622cbfe426b54083c09eda28731e8e *help/getValidSourceTypes.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/hubError,HubMetadata-method.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/hubError,list-method.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/hubError.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/inputFiles,HubMetadata-method.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/inputFiles.html
aa24910489e8b45065c4070f1b815916 *help/makeAnnotationHubMetadata.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/makeAnnotationHubResource.html
93469a7aade0e6dd1b7d287a013b1897 *help/makeEnsemblFasta.html
93469a7aade0e6dd1b7d287a013b1897 *help/makeEnsemblFastaToAHM.html
93469a7aade0e6dd1b7d287a013b1897 *help/makeEnsemblTwoBitToAHM.html
61444e7e6884543a1f9fec11bd563b21 *help/makeGencodeFasta.html
61444e7e6884543a1f9fec11bd563b21 *help/makeGencodeFastaToAHM.html
5bb807b90ce2e59de549db9c4e92a4b7 *help/makeNCBIToOrgDbsToAHM.html
5bb807b90ce2e59de549db9c4e92a4b7 *help/makeNonStandardOrgDbs.html
5bb807b90ce2e59de549db9c4e92a4b7 *help/makeStandardOrgDbs.html
5bb807b90ce2e59de549db9c4e92a4b7 *help/makeStandardOrgDbsToAHM.html
5bb807b90ce2e59de549db9c4e92a4b7 *help/makeStandardTxDbs.html
5bb807b90ce2e59de549db9c4e92a4b7 *help/makeStandardTxDbsToAHM.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/metadata,HubMetadata-method.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/metadata.html
a3720e9c27488a2cbfe239f299da6677 *help/metadataList.html
a3720e9c27488a2cbfe239f299da6677 *help/metadataTable.html
a3720e9c27488a2cbfe239f299da6677 *help/newResources,EncodeImportPreparer-method.html
a3720e9c27488a2cbfe239f299da6677 *help/newResources,EnsemblFastaImportPreparer-method.html
a3720e9c27488a2cbfe239f299da6677 *help/newResources,EnsemblGtfImportPreparer-method.html
a3720e9c27488a2cbfe239f299da6677 *help/newResources,Grasp2ImportPreparer-method.html
a3720e9c27488a2cbfe239f299da6677 *help/newResources,HaemCodeImportPreparer-method.html
a3720e9c27488a2cbfe239f299da6677 *help/newResources,ImportPreparer-method.html
a3720e9c27488a2cbfe239f299da6677 *help/newResources,Inparanoid8ImportPreparer-method.html
a3720e9c27488a2cbfe239f299da6677 *help/newResources,NCBIImportPreparer-method.html
a3720e9c27488a2cbfe239f299da6677 *help/newResources,RefNetImportPreparer-method.html
a3720e9c27488a2cbfe239f299da6677 *help/newResources,UCSCChainPreparer-method.html
a3720e9c27488a2cbfe239f299da6677 *help/newResources,UCSCFullTrackImportPreparer-method.html
a3720e9c27488a2cbfe239f299da6677 *help/newResources,UCSCTrackImportPreparer-method.html
a3720e9c27488a2cbfe239f299da6677 *help/newResources,dbSNPVCFImportPreparer-method.html
a3720e9c27488a2cbfe239f299da6677 *help/newResources.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/outputFile,HubMetadata-method.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/outputFile.html
dd2cac0868064cc3469ecb77762f9629 *help/paths.rds
35c91344417713606e44b0fb4a96057f *help/pushMetadata.html
35c91344417713606e44b0fb4a96057f *help/pushResources.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/recipeName,HubMetadata-method.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/recipeName.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/run,AnnotationHubMetadata-method.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/run.html
35c91344417713606e44b0fb4a96057f *help/runRecipes,AnnotationHubMetadata-method.html
35c91344417713606e44b0fb4a96057f *help/runRecipes.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/show,HubMetadata-method.html
a3720e9c27488a2cbfe239f299da6677 *help/show,ImportPreparer-method.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/show.html
a3720e9c27488a2cbfe239f299da6677 *help/sourceUrls.html
7e622cbfe426b54083c09eda28731e8e *help/suggestSpecies.html
98e3fd9d3f4a145c3fd0b3e1adb9ad8b *help/toJson.html
35c91344417713606e44b0fb4a96057f *help/updateResources.html
3b6b6f0513fb652cd4acb78aa9ecb80c *help/upload_to_S3.html
7e622cbfe426b54083c09eda28731e8e *help/validDispatchClass.html
7e622cbfe426b54083c09eda28731e8e *help/validSpecies.html
7e622cbfe426b54083c09eda28731e8e *help/validationFunctions.html
5bd0b7ffdd33bcc9be3abae22e89dc94 *html/00Index.html
5a84f160ef780ec10d12e5df99627685 *html/AnnotationHubData-package.html
f86dcc31802fbfc75aa410990ad7e9f3 *html/AnnotationHubMetadata-class.html
30e731b8f659cda58cec8d79f66f670f *html/ImportPreparer-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
6864db8eb8a9b5c7fe74a3c9f10d4811 *html/flog.html
88ee6e559c39885a0421a7ed54dd2e70 *html/makeAnnotationHubMetadata.html
6a9398670dc5aa76130e43b1dcecfc46 *html/makeEnsemblFasta.html
53245ccf886827ccdb91977119ade4e0 *html/makeGencodeFasta.html
ed3d12b68cbf535e94bb5d33c8f218df *html/makeStandardOrgDbs.html
503bc85dfbd0472eabc12960d15494c0 *html/updateResources.html
af7da39f8f8b0ddfe19964a88d71ba48 *html/upload_to_S3.html
b26edfc6298eeae9071d1bbb03967001 *html/validationFunctions.html
382369e38ab64756bfcc4c9ab164a6c6 *makefile
4b73f9e73392e4a42c58fec1eee72c5c *scripts/CheatSheet.Rmd
ae6e0ee8fd1e79654fa26ef5f29f13ac *scripts/addContributedResources.txt
efd2449aac9e11eb96155b7f77b9f0af *scripts/oldVignettes/AnnotationHubData.Rmd
dc5b732d7d1cf0f603fbd4a450a9aed2 *scripts/oldVignettes/AnnotationHubRecipes.Rmd
9fe3d67863c9f415457fa1d32fbe492f *scripts/singleContributedResourceTemplate.R
b3f42e904caa49ba987102310886f139 *unitTests/cases/encodeDCCMetadata/tbl.parsedEncodeMetadata.RData
ff5271c1077018b440f7face57452c7a *unitTests/cases/encodeDCCMetadata/wgEncodeAffyRnaChip.info
ccd527e76f551a458d21075bdadb8b49 *unitTests/cases/encodeDCCMetadata/wgEncodeAwgDnaseUniform.info
358aa9045f5c602913fb37575875d93d *unitTests/test_AnnotationHubConstructor.R
9eb476c10d3b5afee84f13c18a5593ad *unitTests/test_ImportPreparer-class.R
ebea49b0d0267ec88857e2d49b3ad9dc *unitTests/test_recipe.R
ef36ad6f905023ed49a3b940189660c9 *unitTests/test_validityFunctions.R
c8af4ad063d82a8754d03dae6399a280 *unitTests/test_webAccessFunctions.R
