616cb17f5752c172033dc701937e90ae *DESCRIPTION
91d413d5150ec06f174978545498270d *INDEX
39d39a1ed983b10fa7e39bcae1d8100f *Meta/Rd.rds
d776df454cb6516d9d7100b4b4920d68 *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
99571136f68e2b39664ac13322014774 *Meta/hsearch.rds
5db778fe33792741e688a6a086cda8cf *Meta/links.rds
bf92810e2fed885598b75e5c5eee5262 *Meta/nsInfo.rds
c5b9c74a7d411cbd31767e6110bbb345 *Meta/package.rds
f427681429c388b3d88c745b2c6f50c6 *Meta/vignette.rds
ae59b8a6e95d660b2b63a851c68911a9 *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/Basic4Cseq
d1144769d0f1c33b5de398a1c494ebbb *R/Basic4Cseq.rdb
be28c919ee139716349b9e0643f495e0 *R/Basic4Cseq.rdx
371a0994c3f3c2931aed600ac0183fde *data/liverData.RData
ba5c985bdae524e41b9b8a24d0cebb38 *data/liverDataRaw.RData
cb12cab230a19f7373dab080cd9dfade *doc/index.html
0cded5c665295c5748d19bad3ffdd592 *doc/vignette.R
67392a702c2453b846903e0c1a42e6c0 *doc/vignette.Rnw
adcda8cadae9141e492ef7198d9f4eef *doc/vignette.pdf
b90cc5bc0dca1138debae1179cb813f8 *extdata/RCircos_GRCm38_ideogram.csv
6cbaecaf4ed2293298343bfce751c258 *extdata/RCircos_HG19_ideogram.csv
00c1d1d92fa3a07f3403a5c039f899c7 *extdata/enzymeData.csv
6332710cc1a1ee8ef40cb95538a94929 *extdata/fetalLiverCutter.sam
4f671ebe3f1c6dc00177f7d50b8944df *extdata/fetalLiverShort.bam
614b15a01e9f8d0bd62458ec969845c7 *extdata/fetalLiverVP.bed
ab13942a15e17712f182b3b1c1e0363a *extdata/fetalLiver_finalFragments.csv
a3e529247e47214266dd2a252dfb039b *extdata/transInteractionData.txt
d39a2c0c80702059da9c6f99ae18a212 *extdata/veryShortExample.fastq
a80e603e40f7343b0bb97c1380df61c8 *extdata/veryShortLib.csv
e9e6b8add27c84f481a1839f9db793d1 *extdata/veryShortReference.fasta
ac34dfc4f22e37a2a286f31ddf7ecceb *extdata/veryShortReference.fasta.amb
06d4a319a43ef8e7bf7f0090e14e6433 *extdata/veryShortReference.fasta.ann
88c3629f9b4134224e100e04d1fcc251 *extdata/veryShortReference.fasta.bwt
cfc9149681143ca9aff12fe0842e34d1 *extdata/veryShortReference.fasta.pac
3748a2acac76bf91845f10bd7df8dabb *extdata/veryShortReference.fasta.sa
e914f0f7d046dc7494eeb2e2d3348ed2 *extdata/vfl_aagctt_catg_mm9_54_vp.csv
cb8113f292b6668dd86d61425d18203a *help/AnIndex
9ed854a443babbe7c12a3a93bcd46576 *help/Basic4Cseq.rdb
b2bd3dbd0152785e2f78dfb8303bfed8 *help/Basic4Cseq.rdx
9fb0e491d6cde6327ae96e7486ff827c *help/Data4Cseq,character,numeric,numeric,data.frame,GAlignments-method.html
9fb0e491d6cde6327ae96e7486ff827c *help/Data4Cseq,character,numeric,numeric,missing,missing-method.html
2fcc019151062b8af988e5d658e3abfa *help/Data4Cseq-class.html
9fb0e491d6cde6327ae96e7486ff827c *help/Data4Cseq.html
55cd85cb0c0b193c6e7ba8beb71e2dfa *help/aliases.rds
d8abeb43104a9b70729c007c9242564a *help/checkRestrictionEnzymeSequence,character,character-method.html
d8abeb43104a9b70729c007c9242564a *help/checkRestrictionEnzymeSequence.html
7348aa0844488491bfecd6a5651ca2be *help/chooseNearCisFragments,Data4Cseq,numeric-method.html
7348aa0844488491bfecd6a5651ca2be *help/chooseNearCisFragments.html
be146b4b78919327f3862f26fe8a00df *help/createVirtualFragmentLibrary,BSgenome,character,character,numeric-method.html
be146b4b78919327f3862f26fe8a00df *help/createVirtualFragmentLibrary,DNAString,character,character,numeric-method.html
be146b4b78919327f3862f26fe8a00df *help/createVirtualFragmentLibrary.html
1ff3127050769bb3226517bc44094305 *help/drawDigestionFragmentHistogram,data.frame-method.html
1ff3127050769bb3226517bc44094305 *help/drawDigestionFragmentHistogram.html
6276e999d0e6fb74e5f7496988e66b97 *help/drawHeatmap,Data4Cseq-method.html
6276e999d0e6fb74e5f7496988e66b97 *help/drawHeatmap,data.frame-method.html
6276e999d0e6fb74e5f7496988e66b97 *help/drawHeatmap.html
38a1f3066a0687a5d7732f666f3d017e *help/exportVisualizationFragmentData,Data4Cseq,character-method.html
38a1f3066a0687a5d7732f666f3d017e *help/exportVisualizationFragmentData.html
620d9e97a4b9507f5957343b3c66e01a *help/getReadDistribution,Data4Cseq-method.html
620d9e97a4b9507f5957343b3c66e01a *help/getReadDistribution.html
fb513ea1cfd849cebfbff4ab7234649d *help/giveEnzymeSequence,character,character-method.html
fb513ea1cfd849cebfbff4ab7234649d *help/giveEnzymeSequence.html
92dc1273f24b1e8463a1cce97a384e22 *help/importVisualizationFragmentData,character-method.html
92dc1273f24b1e8463a1cce97a384e22 *help/importVisualizationFragmentData.html
d60c5e65a0c54b758cfe5d269a7585da *help/liverData.html
f984d8094f20d60d6270610d657a9da9 *help/liverDataRaw.html
2fcc019151062b8af988e5d658e3abfa *help/nearCisFragments,Data4Cseq-method.html
2fcc019151062b8af988e5d658e3abfa *help/nearCisFragments.html
43f47b84e448e2ae8664577c053479fe *help/normalizeFragmentData,Data4Cseq-method.html
43f47b84e448e2ae8664577c053479fe *help/normalizeFragmentData.html
68e47911504b0eaa5bf86c72b5224fe6 *help/paths.rds
636ba6cebfd07534902e3c2b167da044 *help/plotTransInteractions,character,character,numeric,character-method.html
636ba6cebfd07534902e3c2b167da044 *help/plotTransInteractions,data.frame,character,numeric,data.frame-method.html
636ba6cebfd07534902e3c2b167da044 *help/plotTransInteractions.html
2fcc019151062b8af988e5d658e3abfa *help/pointsOfInterest,Data4Cseq-method.html
2fcc019151062b8af988e5d658e3abfa *help/pointsOfInterest.html
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3bd5f3595e139ebba67c62826338b92c *help/prepare4CseqData.html
d5d70d2c02da007cf0965e0ee4a63eca *help/printBEDFragmentLibrary,character,character-method.html
d5d70d2c02da007cf0965e0ee4a63eca *help/printBEDFragmentLibrary.html
f7a5780c0bbc961f3757e0dcd9c02005 *help/printWigFile,Data4Cseq-method.html
f7a5780c0bbc961f3757e0dcd9c02005 *help/printWigFile.html
2fcc019151062b8af988e5d658e3abfa *help/rawFragments,Data4Cseq-method.html
2fcc019151062b8af988e5d658e3abfa *help/rawFragments.html
2fcc019151062b8af988e5d658e3abfa *help/rawReads,Data4Cseq-method.html
2fcc019151062b8af988e5d658e3abfa *help/rawReads.html
2fcc019151062b8af988e5d658e3abfa *help/readLength,Data4Cseq-method.html
2fcc019151062b8af988e5d658e3abfa *help/readLength.html
8ca1e41e448a831bd2697b9b56c70e0f *help/readPointsOfInterestFile,character-method.html
8ca1e41e448a831bd2697b9b56c70e0f *help/readPointsOfInterestFile.html
5553423ebe3a67c7297179843d946230 *help/readsToFragments,Data4Cseq,character-method.html
5553423ebe3a67c7297179843d946230 *help/readsToFragments.html
3d723badcd104455a046cbd5b684841a *help/simulateDigestion,character,character,BSgenome-method.html
3d723badcd104455a046cbd5b684841a *help/simulateDigestion,character,character,character-method.html
3d723badcd104455a046cbd5b684841a *help/simulateDigestion.html
2fcc019151062b8af988e5d658e3abfa *help/viewpointChromosome,Data4Cseq-method.html
2fcc019151062b8af988e5d658e3abfa *help/viewpointChromosome.html
2fcc019151062b8af988e5d658e3abfa *help/viewpointInterval,Data4Cseq-method.html
2fcc019151062b8af988e5d658e3abfa *help/viewpointInterval.html
5e4b84ba0b38b44b0b04eda1b542db03 *help/visualizeViewpoint,Data4Cseq-method.html
5e4b84ba0b38b44b0b04eda1b542db03 *help/visualizeViewpoint,data.frame-method.html
5e4b84ba0b38b44b0b04eda1b542db03 *help/visualizeViewpoint.html
47a382e1921e7a2e1d61f17f05957e0d *html/00Index.html
9db2b29ddaf3b52eb1a00b0037ed1206 *html/Data4Cseq-class.html
6ea23bd1a7e649d7b6e31abac92d5133 *html/Data4Cseq.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
4c4339360a7fd637bfcdec897b34cac4 *html/checkRestrictionEnzymeSequence.html
b022489e4d39dfef726fdacacf1b60b5 *html/chooseNearCisFragments.html
7605864fb1ddd1adde02f8befe2edd06 *html/createVirtualFragmentLibrary.html
dad77b7f010b5f42c5a7b37225b8560d *html/drawDigestionFragmentHistogram.html
02be9ad27eb5f0b988b6518f2d206bdc *html/drawHeatmap.html
3f2be1e8ef57a47336fb5217005a9bf4 *html/exportVisualizationFragmentData.html
2359d3e5b82600f5dbd41f53fc39331e *html/getReadDistribution.html
9934b8c686b7bae8f046dfb5feb3b917 *html/giveEnzymeSequence.html
a9bb283994bc41369a897190c6b571ee *html/importVisualizationFragmentData.html
d095d4a79394bb5a5c4ecf374492f42b *html/liverData.html
8b3a723ba731bc5f39073cf26b15cebb *html/liverDataRaw.html
d226c1fbc7d3c32c08e29b57c99054ac *html/normalizeFragmentData.html
0e46ac57f016ef4d2938307a31745de4 *html/plotTransInteractions.html
2f81187eb520725cd13dc5d76f9f492a *html/prepare4CseqData.html
d5b692d121ca3bb79a53e0e57ddeb3e4 *html/printBEDFragmentLibrary.html
e95d37a96ab0be3e711333775029efa6 *html/printWigFile.html
99d74cbda95ce69f27a94d1c33e25cae *html/readPointsOfInterestFile.html
09b7bb320b0b77e0f570dc1886dfac9d *html/readsToFragments.html
87688038491757cd3cae02b9446dcc83 *html/simulateDigestion.html
5ccde23d7fcdcd4e52ee29033a9ea705 *html/visualizeViewpoint.html
