4f97238aa526201dc53bd048f419afc8 *CITATION
8807217bea56e96b9f2afc873d28022c *DESCRIPTION
5ac3917f11b0476e35f99fe02b31cb92 *INDEX
832899d67a9fd353f9945be7f73308ba *Meta/Rd.rds
5dd9b10949769fe3949fd5f75fb359e7 *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
a6f044fe76fdfb39d2fac81067d5894e *Meta/hsearch.rds
cbcf208e86090aad7fe60fb76a5330bb *Meta/links.rds
1d1e836ad3814bee989a79c658b1e3c1 *Meta/nsInfo.rds
9af5cbb7be7055abe54330fde89b4499 *Meta/package.rds
6300fe09d490bb0c85902812f4a85aba *Meta/vignette.rds
1834c60fdd14fe587e1ab86c9125b7f7 *NAMESPACE
0cf708227d96dc3c8f5b5edb245ce1a0 *NEWS.Rd
d6c68f1fe41ced6e98a766a3757313da *R/BatchQC
6cc7177082045844c103e93ba9e442c4 *R/BatchQC.rdb
3210878b4e10c6cdf18c027835874901 *R/BatchQC.rdx
eba540185eda7dd1fd64fa04d565edf4 *data/example_batchqc_data.rda
f13fac0700b994278304bd85001d305f *data/protein_example_data.rda
2ee1948482b7a0947fea3163308a45ce *doc/BatchQCIntro.Rmd
ef93dd7d08e53e1fbf0aa6d9aac7f2bf *doc/BatchQCIntro.html
be7482159d231cb0f42243cfcd2236ff *doc/BatchQC_examples.Rmd
af45a326e799ab21f9be673715629f54 *doc/BatchQC_examples.html
e3245ee24e4c3c02dc4a8f073d59669b *doc/BatchQC_usage_advanced.R
8b3ffd06e192642418fc652a0b02e30d *doc/BatchQC_usage_advanced.Rmd
30f8613f7e3c63f6222e448301081992 *doc/BatchQC_usage_advanced.pdf
8bc760706be2e3b64b77e6307c29113a *doc/index.html
f434a8e72b4b9f0eb7e8b1bdffdc9b37 *example/batchqc_combat_adj_report.html
f0c9bcde568d0a055d5cbf52b0c85426 *example/batchqc_pipeline.R
4b2b1096080c7387889f1e4cf96ddf29 *example/batchqc_report.html
deda7a35f0f8c09ebc3e212a470d97bd *help/AnIndex
a81b5786f8b593820afe808f81f926dc *help/BatchQC.rdb
b81f454cb60c98cf28c58cc43da5d71b *help/BatchQC.rdx
03f1eabc811ee4992078a20d25b82c41 *help/BatchQCout-class.html
eee8117d72faa7b5b78a904bac48d557 *help/aliases.rds
6cbe673bd79d87ea12ae0f64a097d721 *help/batchQC.html
d73d67113cfb57500c98da1a6ffb10be *help/batchQC_analyze.html
76a60017c7ed4beda688b2fe97d799c4 *help/batchQC_condition_adjusted.html
d96c4da8343ddb3515dca46cf24599a9 *help/batchQC_filter_genes.html
4a8ef9a96e7455af276509c488059c35 *help/batchQC_fsva_adjusted.html
0d2f5771f45cca400b697b5ba4972cee *help/batchQC_num.sv.html
60faedfb127a8988d6dcdd3d0f668ac4 *help/batchQC_shapeVariation.html
bb753f7d3b7b15956233d0e440bca84a *help/batchQC_sva.html
e4752820ee1784b75642e1048938f227 *help/batchQC_svregress_adjusted.html
5799bddaf2293718e3020357a56129be *help/batch_indicator.html
5e8458328d6d7e14377c19871e942e1c *help/batchqc_circosplot.html
30ddc1ca983d90420ff8ab405c69b1fa *help/batchqc_correlation.html
4269791b672a2041c44166ed2d6e89b7 *help/batchqc_corscatter.html
e1b71ef36030ac38942801abff49d89d *help/batchqc_explained_variation.html
6abb5753cfb91a786adea814589c28af *help/batchqc_heatmap.html
4b0d0d5b92ecb9cb5ae319c2e6643f7b *help/batchqc_pc_explained_variation.html
87ca3ee26e916b1d2dcb7774fd204b3c *help/batchqc_pca.html
bd44597d031eef788ed1a61c90e2deae *help/batchqc_pca_svd.html
7db9babd32d3e95e280251f36015e450 *help/batchtest.html
91db3e60c9a5879a10344c18098fc7ae *help/combatPlot.html
5799bddaf2293718e3020357a56129be *help/example_batchqc_data.html
59c459b13c81f5f97ef62e4ecf428dda *help/getShinyInput.html
11663742966e60378b6cb63c2ec21b0f *help/getShinyInputCombat.html
ae8505e57d3013a3bded94ea68d2608f *help/getShinyInputOrig.html
ba0757fff8b894f210a53bb32c0a9bee *help/getShinyInputSVA.html
38d88741e5174b0de90b0cc8812f9eb6 *help/getShinyInputSVAf.html
b7fdb05d04e9cdf5df7c0f37ae450990 *help/getShinyInputSVAr.html
44fd19157a5e8ce0e2ef3647e22af2e9 *help/gnormalize.html
77c2152290463e01a44da9caf33b8437 *help/lmFitC.html
4705c3bc7ff59d6c8d03477bc39b77c0 *help/log2CPM.html
5059eee28a4a80a765aed9a6ab66f4d4 *help/makeSVD.html
8c64505bfa5d7afcba50b19094dc3e31 *help/paths.rds
b03e53f45719327c0e14b7d8d3097965 *help/pcRes.html
af85a4ab8ddabd459a73b448b74ba9ba *help/plotPC.html
3df2d11975335355a6d711d57840f337 *help/plot_genewise_moments.html
baff955bf84fc0c88246d22fd77ac8c6 *help/plot_samplewise_moments.html
b4e0fd043d9114ceee2dd2476c6e2cc6 *help/protein_data.html
b4e0fd043d9114ceee2dd2476c6e2cc6 *help/protein_example_data.html
b4e0fd043d9114ceee2dd2476c6e2cc6 *help/protein_sample_info.html
f9438ca75c2312437d77b9c6cda40bf4 *help/rnaseq_sim.html
3d4f7609120c53ca53f361a2aa31f651 *help/setShinyInput.html
73fcbc22fcc2aef5726a9dde725afa7f *help/setShinyInputCombat.html
acf7b13fb5a00255d2cb989765a9ce63 *help/setShinyInputOrig.html
786eb1134c9470731a08ed586944b561 *help/setShinyInputSVA.html
68d0540e46f076710d6b98213496141b *help/setShinyInputSVAf.html
e82040d642db1b048856079732c10cae *help/setShinyInputSVAr.html
5799bddaf2293718e3020357a56129be *help/signature_data.html
e108dbbe06c7ca80458ce1259048b3d2 *html/00Index.html
8cd2563ad778f24cc1faa7d9dc6af226 *html/BatchQCout-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
7bc802b454ac3b64f56adb92ce20a247 *html/batchQC.html
913f7bb98052113e542ce409d5d7f283 *html/batchQC_analyze.html
3ab6e465222482b84643c7bcbc0e3928 *html/batchQC_condition_adjusted.html
45dd68ca79cf1f800aee4473c573e826 *html/batchQC_filter_genes.html
489cd4d72e1bfbbc27bb5099d0170ad1 *html/batchQC_fsva_adjusted.html
400c92695badbb2ed4cdd65292045e49 *html/batchQC_num.sv.html
c30b8196986d2e43769f2dc60cbde0d0 *html/batchQC_shapeVariation.html
649d0e1c6027cab4899261c28e20b488 *html/batchQC_sva.html
976e2e6a90f4907ef64921a396481e7c *html/batchQC_svregress_adjusted.html
53f29b6e5cd92b7564b0053feb17d7b2 *html/batchqc_circosplot.html
d1666e78ae74232d4095aea0356aac2e *html/batchqc_correlation.html
9de0a91dd4a9433731ed03861adbd0e8 *html/batchqc_corscatter.html
ebc189de01e61baf99a110b3fb497311 *html/batchqc_explained_variation.html
5ae1025fe4460f93892672f1bc13c214 *html/batchqc_heatmap.html
a5b59380e607ef88969eeee3cf71e7ca *html/batchqc_pc_explained_variation.html
9d15d9f7a8997ddb274266e2ae133fef *html/batchqc_pca.html
3174a5eb8d26fff1015a39807322c443 *html/batchqc_pca_svd.html
a77f1ddc93eb1b109e48ac4179a31045 *html/batchtest.html
365bd9183e699f166908272de0e53202 *html/combatPlot.html
6c31f88953ec815ebbed3b02a7bc039f *html/example_batchqc_data.html
0b5084e4fcc985af290cdd25ebe793f2 *html/getShinyInput.html
c5f551acf93bb5413c9ac4df60c92ce4 *html/getShinyInputCombat.html
e9c861fe7024c028b3dce7f98c0677e6 *html/getShinyInputOrig.html
09777c7eaf4325c5d2262f369d8df7e1 *html/getShinyInputSVA.html
ac0a80716fa8f9afc091be884b69e36a *html/getShinyInputSVAf.html
3f7a777227b4514d58a9cc922239acd1 *html/getShinyInputSVAr.html
e71c44367a8eea5c2cee5eae70087522 *html/gnormalize.html
cfb651c9097926d599b141cca40ff309 *html/lmFitC.html
20ac851966e1f8d18f5c1183a45dcfe4 *html/log2CPM.html
97274afe281ef7f9d4628ed7bf843b97 *html/makeSVD.html
7e15821a0d0b0ec103570cb0e3b5b06f *html/pcRes.html
d14ac042ac82d95c383f35bdb1ce0cd4 *html/plotPC.html
58ff40c826578496818d34a0b647e9b0 *html/plot_genewise_moments.html
1f638ea8b36738f01f30da4321eb609f *html/plot_samplewise_moments.html
e3d305be8c1dff70da1d5eff7ea1213f *html/protein_example_data.html
4f8d8c6ec4472cb56b541bc679291c3d *html/rnaseq_sim.html
60bc0a7b301c0e081daaf050facea5b8 *html/setShinyInput.html
7c5517259cd013a628aaeaf08a4c680a *html/setShinyInputCombat.html
a81e10f6fa52a225b35bc886a75b9a22 *html/setShinyInputOrig.html
3fbd1a5274666311b07cba259c656d14 *html/setShinyInputSVA.html
06f4f292ae1d00aec8d866f725cff63a *html/setShinyInputSVAf.html
5798281987f0cfbca9a19cdb8fdef1bd *html/setShinyInputSVAr.html
b82bc7b59add04d0daf658be91c02232 *reports/batchQC.html
200c671d341b91ee322a00ce4f61f466 *reports/batchqc_report.Rmd
f889adb0886162aa4ceab5ff6338d888 *reports/libs/bootstrap/css/bootstrap-responsive.min.css
4082271c7f87b09c7701ffe554e61edd *reports/libs/bootstrap/css/bootstrap.min.css
4a150670f77385a5dfcad362cd91fde1 *reports/libs/bootstrap/css/user.css
9bbc6e9602998a385c2ea13df56470fd *reports/libs/bootstrap/img/glyphicons-halflings-white.png
2516339970d710819585f90773aebe0a *reports/libs/bootstrap/img/glyphicons-halflings.png
d700a93337122b390b90bbfe21e64f71 *reports/libs/bootstrap/javascript/bootstrap.min.js
33d85132f0154466fc017dd05111873d *reports/libs/bootstrap/javascript/jquery-1.10.1.min.js
35065c99915530281a328eae2a1960be *reports/libs/bootstrap/javascript/user.js
beee6e075d64d660bff121b73752db04 *rmarkdown/templates/batchqc/skeleton/skeleton.Rmd
b1f3e01bb67c37ff8d3ddebfcf9499f2 *rmarkdown/templates/batchqc/template.yaml
c203d8173515362943c131c00721cc0a *shiny/BatchQC/server.R
2d2f6897aea838ab1804333ff1f8b0e0 *shiny/BatchQC/ui.R
