09c65bc1d78a2a33bc7f5beb17207089 *CITATION
4e01e2b14860f8a758fde9eef363411f *DESCRIPTION
989d8ef4f926c07271682e5c49271316 *INDEX
0a1899da2d6de348416c62daad9948f7 *LICENSE
67b15288e11862d2c35b0566c461765c *Meta/Rd.rds
f087eb90e9ac4454f877628b55a97e89 *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
aee1a720dc19c036c451dabebbc55aa1 *Meta/hsearch.rds
93ba6d1bea9400fb107240c1be3b3f86 *Meta/links.rds
900f001f9140ad4dc4b51c2f8eae3296 *Meta/nsInfo.rds
5a3d1833ed2caffe4214bb8c5e452d60 *Meta/package.rds
d98e5d45ef016f5469476998eff77ddd *Meta/vignette.rds
7e155497cf2b9af6003d3fac47a5606d *NAMESPACE
502258d6beca9ba30bee7b2b7be8300c *NEWS.Rd
d6c68f1fe41ced6e98a766a3757313da *R/DAMEfinder
7aa3621267d9994fdd9931b00f55488d *R/DAMEfinder.rdb
9b5bb21620a146d6f86b0bf5dd4907fb *R/DAMEfinder.rdx
c9d2930d4d9c301a5bf786ecae2eded9 *data/extractbams_output.rda
14191c1edb7ae295a9c9838589416b45 *data/readtuples_output.rda
9333d55f6092e6ced4d4b800dc160cf8 *doc/DAMEfinder_workflow.R
9c45cdf92bcb2cac6a14462d98a06490 *doc/DAMEfinder_workflow.Rmd
835bec4e36204f1f80d788eae799d6a7 *doc/DAMEfinder_workflow.html
680dc99d32f897e1eb8d7cb9026a9120 *doc/index.html
daf558746caa459d128b1edcfd93915e *extdata/CRC1.chr19.trim.vcf
a3fa6a42464200025a673ef030513998 *extdata/CRC1_chr19.qs.CG.2.tsv.gz
0f29a7e50e6e2979be3a9a51014d1197 *extdata/CRC1_chr19_trim.bam
1a7c9830c7d6b8b09906b1dc7121b473 *extdata/CRC1_chr19_trim.bam.bai
9222a67cd3a6b0cfc18efd1355fcbc51 *extdata/NORM1.chr19.trim.vcf
cbc710962aa110134e2d5afcf3ca86b2 *extdata/NORM1_chr19.qs.CG.2.tsv.gz
8530eed239d8855e2491aa8c4283dccb *extdata/NORM1_chr19_trim.bam
0289955249e6ca9dfc11d3857e8aca94 *extdata/NORM1_chr19_trim.bam.bai
9cc429baf829fcceb7d0bf6d954f72dc *figures/DAME_only30reads.png
819d71dc2155c348f38b8a8c04cd59f7 *figures/DAME_snp_allsamps.png
77cb5e71d84ca11e26254618cb61321e *figures/DAME_snp_allsamps_median.png
8b5f4d1f6c5300c3318e75cd6e4c7742 *figures/DAME_snp_sampledreads.png
69b1d037d321c943b119a2019dc1c58b *figures/DAME_tuple_allsamps.png
5ca20291a9dc0fabd5e7dd7377cf5d14 *figures/DAME_tuple_allsamps_median.png
a9107c0f715cc46a7c8356fa1a6e1014 *figures/DAMEfinder_workflow.png
cffe6fdf85143d33894cf85dd951b0da *figures/damefindersticker.png
9676c9c0ad674f0a2470ca1d4ae560d6 *help/AnIndex
ff98580647390eb38bcbd018e8a062b8 *help/DAMEfinder.html
1822c714cebe50dfe43011e62b948329 *help/DAMEfinder.rdb
f0931ff4e25ff2cbb310c0d25f529677 *help/DAMEfinder.rdx
dc5cffbec12c49816a40d6b406521c07 *help/aliases.rds
490ae7f9fb9225a9e0ef0d7a80025d53 *help/calc_asm.html
a66e4ad431c4cedc91c06d9937415c5b *help/calc_derivedasm.html
9f8d2145eb3525ccddd533095ab48584 *help/calc_logodds.html
82a53132f1d4d38ecb9226f5b6a94287 *help/calc_score.html
f72fa65eba15f34a833aba95ec402807 *help/calc_weight.html
458c150fb7227909410c34450fbbf304 *help/dame_track.html
b99c467fbc84cae42f20d988e9d9a9e1 *help/dame_track_mean.html
d0bf79151b27e27cf3dcce5a44d3c5b0 *help/empirical_pval.html
ee7fd836d1f7db28432649bb242facab *help/extract_bams.html
7508e6951ed1e6782c18283209873027 *help/extractbams_output.html
654fdd4602a2a4e64af51a9b843209b2 *help/find_dames.html
22db98c77f62cb021eb17e09028a7c91 *help/getMD.html
7e2b8db5b4c06060a5d4af1ecc2def86 *help/get_tstats.html
a6fe8f0b8bcfe8af4b7506e20bca22cd *help/methyl_MDS_plot.html
41c75840a972928538320ddbb29df97e *help/methyl_circle_plot.html
dcf7639cb9ec2a4c8577217517584f0d *help/methyl_circle_plotCpG.html
a15942bdf99e0ca7a91ae151425555d5 *help/modulus_sqrt.html
01dff3d023faa54714ccd24fdab367e9 *help/paths.rds
850bb97c22d13479fbcf7d90161f7ae2 *help/read_tuples.html
3297f68f546171ee4ef643006daa358d *help/readtuples_output.html
45fb90b0ba8382deb8e19f5ea8265c66 *help/simes_pval.html
28f7e9fd4bcfeda0031b053ebc26f86b *help/splitReads.html
f25acd4f49d998b877312f57fa249af0 *html/00Index.html
48414a3e499fc609a1c5cd07649bfe60 *html/DAMEfinder.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
669c13f7b5aff745de7b598fc3c5feee *html/calc_asm.html
baff353743d2ee24a8179eb2f100c819 *html/calc_derivedasm.html
9d950459598ac3f8f8f467bda4ef794f *html/calc_logodds.html
8fd5571a29d0a55e1a6de8f54bc2e4c3 *html/calc_score.html
3faf8072d56b03f6799af53ad452ffad *html/calc_weight.html
2e9c7b1ab4e29463e7c6e11e48b4216b *html/dame_track.html
646edab72aa8622af047b20b3ff7625d *html/dame_track_mean.html
cba97c1c6cbdb6e1cedd3a0ec2b46871 *html/empirical_pval.html
6d7a30f3b2c4bec64e8ceb703f3ce0e4 *html/extract_bams.html
aef6ce66e4f2ec0957a0f09915ba6dda *html/extractbams_output.html
dd347927ae7f57fd4b4774cf63fb686c *html/find_dames.html
556237d772c1df87bc0a966739c0962d *html/getMD.html
f44fd18d24aead7d2669621d99c26fb9 *html/get_tstats.html
23897adca60cda8497424b0804a55872 *html/methyl_MDS_plot.html
18372fb8fed6d7dc849df7ed52e7c81e *html/methyl_circle_plot.html
e870f65f5d9f06f0f1e440a6507ac357 *html/methyl_circle_plotCpG.html
23289bef2e122c048b340ab05e2ad747 *html/modulus_sqrt.html
adfeafd43420991c97a4635ee6a83471 *html/read_tuples.html
fd7a8ff468b08a88e60a977bd702d5a8 *html/readtuples_output.html
afa4140a7c5714d81af9a78d6a12a186 *html/simes_pval.html
94252283d1f2d38176348b0e97fe3e64 *html/splitReads.html
52f98e1f1b0a186bd57f463553e8f624 *scripts/extractbams_output.R
d29bf6b8be58a52fb355591eb4d6e11a *scripts/file_description.txt
0e79c5fc275fb6ab2c7f30b38347c4b6 *scripts/readtuples_output.R
