2544930096f35cbc79ee468307d4e64c *CITATION
de8ae714a9d355f42fe7bc65a1e6c7e8 *DESCRIPTION
35868560b952b73372c6553069a13865 *INDEX
3000208d539ec061b899bce1d9ce9404 *LICENSE
b77453622c1ec7482b86aeedcade6f9f *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
d7152b6f4535f611c9fa9b038af1491e *Meta/hsearch.rds
61076431bdeb7d5aed5e19eaced6504f *Meta/links.rds
11a196c479341e32ad35d6a80398e5dc *Meta/nsInfo.rds
205fa9e904d5276851e18c6eaf00049a *Meta/package.rds
8baf0e5f6df47d74bbe367f865dc6cd5 *Meta/vignette.rds
c6ef27397f298e1a8bf0878c46d55dfa *NAMESPACE
ace3efd14c6459536d53a9dba8c8d0af *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/MOFA2
1418f78f4c6ac2f306d7414b247da19c *R/MOFA2.rdb
2ef22783e2b5af3416c9984311dd9707 *R/MOFA2.rdx
5b11e9f58e8c1270b0c57b7597b0ffc2 *doc/MEFISTO_temporal.R
0479e0399f76c00123109663dadaa417 *doc/MEFISTO_temporal.Rmd
6878d7d646dd53bfc5ed8ca6906d2fcd *doc/MEFISTO_temporal.html
a00df3c0171d22a441d860db5d94f99a *doc/downstream_analysis.R
5048a42c5ef11665663b3b77ebdd7f67 *doc/downstream_analysis.Rmd
648fd49cb1e47ceebd82fa1ac88f9a67 *doc/downstream_analysis.html
2d8d857917f9c918ba30e1381fa2f5f3 *doc/getting_started_R.R
c01af32bae3c4c4f9087e868cb514605 *doc/getting_started_R.Rmd
87c23831e22a40e59d1ea960504bc388 *doc/getting_started_R.html
f7ef578e537d4e7da5e836cb70db128f *doc/index.html
4aeeaac15a0354424d0fa919b7a72fd3 *extdata/MEFISTO_model.hdf5
54eb2626d54d4f833139255039e0a4b2 *extdata/model.hdf5
af0ab637e82dd37bf9c0675c39ea40dc *extdata/test_data.RData
881a43ed112d7eafd6ec8ddb2eff2490 *help/AnIndex
cad7ad7f07ca37db9344ad3147a6219c *help/MOFA-class.html
cad7ad7f07ca37db9344ad3147a6219c *help/MOFA.html
52d604548f59bf40bc3180bffa8c40ce *help/MOFA2.rdb
3da2493762dd5543cda4949c0b49ff09 *help/MOFA2.rdx
b92dbb3b7c159ac72d9412cc6467a428 *help/add_mofa_factors_to_seurat.html
e9d1dd7de7d5fd7d58e2842c597c5d9f *help/aliases.rds
c568cdbc9c85567a48182664fd431693 *help/calculate_contribution_scores.html
b2233eff62d34d8622c95daddb7149ff *help/calculate_variance_explained.html
08610c08835fac87850cb0c98fddf46b *help/calculate_variance_explained_per_sample.html
1c674c708b79a3ba07853e4a78d52378 *help/cluster_samples.html
db3412dd018d78f4a5eed7675d0eb949 *help/compare_elbo.html
2ce2b878da0a94f599d296894bd5ef6f *help/compare_factors.html
4f73bfd8eefea8a14b6acc8c4badf7df *help/correlate_factors_with_covariates.html
c2d4786fa94be63e6c55128ec55056e9 *help/covariates,MOFA-method.html
c2d4786fa94be63e6c55128ec55056e9 *help/covariates_names,MOFA-method.html
c2d4786fa94be63e6c55128ec55056e9 *help/covariates_names.html
5513a91cbd6cff1390d76757c65d40f5 *help/create_mofa.html
4e7f7baab91494ddef7252da93d91bce *help/create_mofa_from_MultiAssayExperiment.html
555f4aa9c12f2500ed76401f4884b541 *help/create_mofa_from_Seurat.html
7067fba10540b9b908abf9972d662664 *help/create_mofa_from_SingleCellExperiment.html
e36ac4189160fd81b5427788e96e491e *help/create_mofa_from_df.html
8ef301d961fadcf3830da246dc3e445b *help/create_mofa_from_matrix.html
2ec3609baabf1076a12f1ae164177aaa *help/factors_names,MOFA-method.html
2ec3609baabf1076a12f1ae164177aaa *help/factors_names.html
7a09f6fbf9d1c6d35a607eaf874b4d85 *help/features_metadata,MOFA-method.html
7a09f6fbf9d1c6d35a607eaf874b4d85 *help/features_metadata.html
1b189e9dfa11cf521f4548fe55e537ed *help/features_names,MOFA-method.html
1b189e9dfa11cf521f4548fe55e537ed *help/features_names.html
e7778b635250b196cf5a90681dc77e9d *help/get_covariates.html
1bd8aa25c8e2ba8def3e7c9f47da7e47 *help/get_data.html
cbb407db164b33f14a4b6d789a7a909f *help/get_default_data_options.html
fdabc15b3d5225d7a5228e3c3e781526 *help/get_default_mefisto_options.html
7ed0a7d299861bf59af81add324bbb54 *help/get_default_model_options.html
d30302e3a16e16fa8dab92cea1c7230b *help/get_default_stochastic_options.html
cad3c3cdf1d9870df47aad2b9be12a03 *help/get_default_training_options.html
6bae69fcafc838c7b3d32d1ab6d99810 *help/get_dimensions.html
f45a42d4b7b27d8512c37c09cebf005b *help/get_elbo.html
32024c7226355fe5880edf8adb058fc1 *help/get_expectations.html
f4da208fa738ec2268c766b04660ba5b *help/get_factors.html
1f80938327a9bb35686e42241140fcb1 *help/get_group_kernel.html
f34683b4ad907e1be64ed015762536e8 *help/get_imputed_data.html
5e924b417ec9761b7fb56945f3eabb45 *help/get_interpolated_factors.html
44d195850df30d8236e1e7ef61f93e0a *help/get_lengthscales.html
8ba24b07d7775896f3c37f0652cb10bf *help/get_scales.html
76557912ea4ffe3acc2f05b6921c721b *help/get_variance_explained.html
04fca7118e99c139e450f8e24af9afff *help/get_weights.html
a1b55d182757bcdbe16d87a7d5187f5d *help/groups_names,MOFA-method.html
a1b55d182757bcdbe16d87a7d5187f5d *help/groups_names.html
5152bf0539b3d80bdafcf85a3680ca24 *help/impute.html
ba584a8e941cd626f2c1f06c7046a78d *help/interpolate_factors.html
e073ac35d1567e655439faac39df208e *help/load_model.html
609859fa8717f6dc6e40b23084cffbf9 *help/make_example_data.html
03518eb0ddea77cad91b8b4ac7a8bf3e *help/paths.rds
3103e0d76b0f117568bc894a412c48dd *help/pipe.html
d03f05fb1452d180314cf4beb26a666b *help/plot_alignment.html
49653b42db02cfc958939cea3c538b24 *help/plot_ascii_data.html
af5b6744afc86d250acb88b1333ee40d *help/plot_data_heatmap.html
7ed2e8183a8f94e6aace47e5f992b96e *help/plot_data_overview.html
04f5966a717279e0b2ccd7ecd24ee02c *help/plot_data_scatter.html
7008de1af71835197ed1b990490e932f *help/plot_data_vs_cov.html
ea1c9b0dc39a052cffd2500c3319ffc7 *help/plot_dimred.html
825dd0e4887283d57f7f6f18e0fdfbd7 *help/plot_enrichment.html
c576232e32866b6c883bbd8aa69ef099 *help/plot_enrichment_detailed.html
4dbc6dc284670d56727557396ec5fdac *help/plot_enrichment_heatmap.html
c307fa8c21abb1775059830ad7f35e48 *help/plot_factor.html
5d97671bf9f53a0c90c1dfffbddb543d *help/plot_factor_cor.html
43321f25893fa8bbd81ef39591ed88fc *help/plot_factors.html
b76cce3bc301f57777bc91cfc2370531 *help/plot_factors_vs_cov.html
d62e018196b8b7a7ccbb89fe0fa62c7d *help/plot_group_kernel.html
55fad0a10c7a386ce8c034a2661e0f5d *help/plot_interpolation_vs_covariate.html
e514dda77587f97e814b90786eb3fc40 *help/plot_sharedness.html
d4d24d9181dfe4ff3709f701e09d8aa1 *help/plot_smoothness.html
97b14bdeed13069a80b245f805c2a999 *help/plot_top_weights.html
87ca297664434d284f2b36675201ca2e *help/plot_variance_explained.html
d31e1353bef4990029b6b8d2bf1c453d *help/plot_variance_explained_by_covariates.html
abcbd650a5d6a068dd7094a0a69d9bd3 *help/plot_variance_explained_per_feature.html
6d2e188c366d6345fe630e0d30aa4458 *help/plot_weights.html
2b1cfcb43fedead952e7c1ff7717fff6 *help/plot_weights_heatmap.html
8a2e6cb7e95d479aeae89eebd356bc94 *help/plot_weights_scatter.html
de805b4363b0a68d6f70b598bfc5416c *help/predict.html
6da8445036e590f26f81b31bd54e804a *help/prepare_mofa.html
fc2dbce3d830242baac70e1819309693 *help/run_enrichment.html
b9675a82065e7182cba8d4ea26b8e267 *help/run_mofa.html
7ddae5878e7409b4de4ae3b52b330711 *help/run_tsne.html
663ef2276921962da73c3d5a09df7e07 *help/run_umap.html
d429ae8d675096207043ebd3bc743094 *help/samples_metadata,MOFA-method.html
d429ae8d675096207043ebd3bc743094 *help/samples_metadata.html
b0f74848e05f7e1a23746b31fd3c6356 *help/samples_names,MOFA-method.html
b0f74848e05f7e1a23746b31fd3c6356 *help/samples_names.html
bc950487e2ea550b76ca39224fbabd56 *help/select_model.html
58295b864cb61704bfe61ac604d6959a *help/set_covariates.html
fe1abd9b184e08199ea4607fac0a290c *help/subset_factors.html
ba69d7d39aeba1cf0270abf0cdeeabe0 *help/subset_features.html
bf17c7891f8138f5b14fe0e28674c1c0 *help/subset_groups.html
98acabd34383baed6ad8d20181ee24e7 *help/subset_samples.html
a1f475d7913794f6661bc6a44a0cab1e *help/subset_views.html
b1576b2b866122ae0484f4bfd548dbea *help/summarise_factors.html
884a621b3b9f6c5c9442205a1ee44b26 *help/views_names,MOFA-method.html
884a621b3b9f6c5c9442205a1ee44b26 *help/views_names.html
f7213b2477cff8c53d53172bdf18be56 *html/00Index.html
71201c58fea236d5c49bf8c1f6f31d4b *html/MOFA.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
af6ea61341b3986077aee4cae1206971 *html/add_mofa_factors_to_seurat.html
9b6e539fdb16fbc88cc2c397abe27a68 *html/calculate_contribution_scores.html
41ec5df9afdc7480087562786ea7199b *html/calculate_variance_explained.html
a1df9ab67702dd58defaa4c1ff5b7dcd *html/calculate_variance_explained_per_sample.html
22449245b2eaa039b0f8b73af1223277 *html/cluster_samples.html
500a24a55757dbbb50f5ddad927001a3 *html/compare_elbo.html
e474848df51d719c57a6972060695ea3 *html/compare_factors.html
39d5a3c303779638b268aa9261b1ecdd *html/correlate_factors_with_covariates.html
1a5465cea793d98bdcf41c490b452895 *html/covariates_names.html
bf61ce6c7b03d8cce1c5075df42eb0e3 *html/create_mofa.html
4dddb0dbcb640b63d53fbd996703caae *html/create_mofa_from_MultiAssayExperiment.html
04b8b8a2023d7152bfaa4a38e2db19bb *html/create_mofa_from_Seurat.html
9dd64fb9d282e1084834533c024799be *html/create_mofa_from_SingleCellExperiment.html
ae1c5cdcd5fa0fa8d13241b506e40ac0 *html/create_mofa_from_df.html
807468fbe285752762499a3f6e0b33cf *html/create_mofa_from_matrix.html
4a1260c9164b426f739ba10102a5bed8 *html/factors_names.html
e06cdf0c598f06cf93bddb9b3fc34a95 *html/features_metadata.html
39459787ad981381f58cf7b4912eec34 *html/features_names.html
94df648e5021192c4a397a232d76b3ba *html/get_covariates.html
3207be37a2593eca38deb38089099658 *html/get_data.html
0835ab99ef768b3f9124b1dcd855f44c *html/get_default_data_options.html
08224ecab7e1eafc406ca9274bacd6bb *html/get_default_mefisto_options.html
75c7a9244aa751144d9e6c27bb4319d5 *html/get_default_model_options.html
4c100fde2878f4b067a562596c85179c *html/get_default_stochastic_options.html
f1ab3401ea3ac3efdcef7dfbc2f02abb *html/get_default_training_options.html
c8a721ce5cbbff1731a6ee2e384a6d6d *html/get_dimensions.html
5a7568bff8082e3fde7ac5b5f5eed75f *html/get_elbo.html
28e3b51d79cc11897269986981106060 *html/get_expectations.html
6a38d86814e1513f72001e03b333a405 *html/get_factors.html
dede9e3bdce8227d19e7b19eb028e9c1 *html/get_group_kernel.html
07a163e29f1b125f07a831e9059dd91c *html/get_imputed_data.html
610913c37cefbd3784f6b368f6a873dd *html/get_interpolated_factors.html
516c59a9ff7fe21c2648a31a4ad7c206 *html/get_lengthscales.html
5a27caa1ec69f862572bede63b5ed141 *html/get_scales.html
d55f3d89140bec9acac09347e068d0f5 *html/get_variance_explained.html
26a2397df4ceea811807b1eb55bf5547 *html/get_weights.html
c50bb86a2147a424e6f01dcb3134d035 *html/groups_names.html
fedee75a36506d6ee8a3304ccaccd781 *html/impute.html
a6f69b6ca655f5f461acfd828fe58b15 *html/interpolate_factors.html
1c360db5e9367de54d3219895cccd8ec *html/load_model.html
202215c7e57e46c67a2aad54d1e9e799 *html/make_example_data.html
505f6860bf88c6fb92ce09b7604e0782 *html/pipe.html
cfa36724fcb3b8614a8c22e1ce1caf87 *html/plot_alignment.html
f4fecb4d848eec7a72d0873faa081fbb *html/plot_ascii_data.html
1dde3adb054beaa1ef99a383431805f8 *html/plot_data_heatmap.html
bc21b612149a3e799dd7e990878c09e7 *html/plot_data_overview.html
b1baab3e108b66f6fb2e33b706e44d3c *html/plot_data_scatter.html
ba293100195c79b93d9451b33305f7d4 *html/plot_data_vs_cov.html
b6d1139cc1ab22ff850c37fcfbd403d6 *html/plot_dimred.html
a9621d438bfdcf0cf3d0800856029f7a *html/plot_enrichment.html
0e42df6c359fb6e937923f58ec33fe12 *html/plot_enrichment_detailed.html
c8444f7234dde1dd45b058ccfc3106c1 *html/plot_enrichment_heatmap.html
d0440760c192c7dc50f672c3731de3f2 *html/plot_factor.html
4a614854f7b5c5bf924397092935b273 *html/plot_factor_cor.html
42fee478f61e046355054b8a633f5512 *html/plot_factors.html
e3e5530fe56b707d5fa98b2613673b6b *html/plot_factors_vs_cov.html
736da4c66906d916cb6eae95a9389a6d *html/plot_group_kernel.html
beea512f0fe563a7c8bbbddf07be80c3 *html/plot_interpolation_vs_covariate.html
a95b3fa66d6f8e4e3c000ac157f873bf *html/plot_sharedness.html
35816c7b5b1ca09c94346b04ad070da4 *html/plot_smoothness.html
1deaff6447425534e3e97d344acafa79 *html/plot_top_weights.html
52b7515374b761f52a0e4269cce28175 *html/plot_variance_explained.html
33664457fe392dbaf4c8ce22386d4d9a *html/plot_variance_explained_by_covariates.html
6aab0ff1b946b8878587e319325d1334 *html/plot_variance_explained_per_feature.html
d9090b63021d6d35dc807da8e99ceaf5 *html/plot_weights.html
be86c790670ae544ad9c9ac990e75e7b *html/plot_weights_heatmap.html
3f671be89f20917173514ffb4c6e5992 *html/plot_weights_scatter.html
2b6b98c83a9500e9d95122c61ae26ce3 *html/predict.html
804d3c67826d9f4f629c5783ade66145 *html/prepare_mofa.html
846bf1a9cb9da6a66d0ce490930a753c *html/run_enrichment.html
e77f00abc3a0ddfdc5c01b7d68a10905 *html/run_mofa.html
c8f984b8267a1ed1a20b11f65103d2c3 *html/run_tsne.html
48a00a09b3f7b983839993db506a26bc *html/run_umap.html
961e56a156a454539e2b4f44cb2abbbb *html/samples_metadata.html
edad2077e46c1a3b18ddb25069e335f1 *html/samples_names.html
0b6bcc8d7a068f2fcf9b8e2f1f34e05a *html/select_model.html
8e0b77495a5a803f662f74aadce80a15 *html/set_covariates.html
99c9fe722f8ba6a1f40820957175a420 *html/subset_factors.html
fc10f3e5ee08812c96773fc75c45a9cb *html/subset_features.html
4a8b4676f47628e5c5e37b8e02474dec *html/subset_groups.html
c5d17f09708ceef0d9d63a2a121eb02a *html/subset_samples.html
dfa40774dffbaee8aa6d82695c4769fa *html/subset_views.html
e9add058770d57598219bbdbe185dcd8 *html/summarise_factors.html
3f336aea234ffb6b4153283427cb2762 *html/views_names.html
5da57a54fed83b6e67b1a29e840f714a *scripts/template_script.R
200afeb450a784388d31ecf809d950a3 *scripts/template_script.py
