3ffcf072b44a90a904c0bec437b6987f *DESCRIPTION
bf34a21ffa8819521ee7aa4ebe1e53a7 *INDEX
0056045675ae37c59b2eb24cb407f7d8 *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
1ee08a360019b8b7dc72d5bde1fc17d8 *Meta/hsearch.rds
ef0d38453099fa674e6da77b7101da65 *Meta/links.rds
09a40238a7d2118618fec38fcaf7314f *Meta/nsInfo.rds
1345f2ee56ef4b91912d2c5d376c15fc *Meta/package.rds
7cf47b8bf16ee8438e00eef970e2137a *Meta/vignette.rds
2cfd6d4006e5d5c1013339357a397beb *NAMESPACE
b7fb900790a740d862746997648dec09 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/PWMEnrich
fa40cf13babd90443f82549bff414aff *R/PWMEnrich.rdb
fa64f81de07c36bc749e75a75bda8a3a *R/PWMEnrich.rdx
b9c0f8a1f1b26b3d0b1a9a6dc2c8c276 *doc/PWMEnrich.R
d9a566a297ac54a9857f2f551dd0773b *doc/PWMEnrich.Rnw
0f793834ef3dec76c659e23bfb3cffe5 *doc/PWMEnrich.pdf
c6c53b28bd3ae2ad02412e78605b93d9 *doc/index.html
d6239fb6ca5c19a03b48c5ef520c4ff7 *extdata/bg.seq-test.RData
16737864e28ca293c3d43c9dc274e810 *extdata/example.fa
08048d68adc5c8493db6f4350732af86 *extdata/example.transfac
415a8826cfb40c10021953ac725c3f78 *extdata/jaspar-insecta.jaspar
378529a644ccceb87d72f3204dda1d59 *extdata/pfm_vertebrates.txt
d5940ef608cce77504b0927133c8dadb *extdata/stripe2.fa
2e6e376108f87945c08ffde1cd39a097 *extdata/tinman-early-top20.fa
c02ea7fc1f9ae04556140024e30f8682 *help/$,MotifEnrichmentReport-method.html
0e9c21cde40672b12b103a07d0cad4cb *help/$,MotifEnrichmentResults-method.html
10d17bfd00ab7fa27a771635c8ad89db *help/$,PWM-method.html
f08f2e76dadcd6e007e6aec5878f62ad *help/$,PWMCutoffBackground-method.html
3b5d3db481cd0224d966797ad31cc4c3 *help/$,PWMEmpiricalBackground-method.html
8110c30560dbb9cea2c584e658fc9a28 *help/$,PWMGEVBackground-method.html
3338054dc82c2a99776c59e65b0a2171 *help/$,PWMLognBackground-method.html
af78e8d53b37a57c29cc886e7c09f420 *help/AnIndex
343b50713b0bfb4d3e07d9e2674f2f42 *help/DNAStringSetToList.html
7c69e16ca8f8fe953431ea7fd8abf7a9 *help/MotifEnrichmentReport-class.html
685e100b9ecb8609c3346b34526253c5 *help/MotifEnrichmentResults-class.html
c5a1e8dcb07ed24961f7a06190a176d0 *help/PFMtoPWM.html
fd8a9f49175cf74338cb901e64b40318 *help/PWM-class.html
bbfac8ce3e88cec5075d72839d21c40d *help/PWMCutoffBackground-class.html
7d5b5f8599ae32068f46140de9bc340d *help/PWMEmpiricalBackground-class.html
f56ecb02c1f7344a52da7f101246cc27 *help/PWMEnrich-package.html
f56ecb02c1f7344a52da7f101246cc27 *help/PWMEnrich.html
ebfbe5f8b0e77b9ab2a7af734f8ff8d1 *help/PWMEnrich.rdb
165db9922192e1b8aaf3db1f3da6ac4c *help/PWMEnrich.rdx
c21c3aee887bcf0827b6ef7e337c7d21 *help/PWMGEVBackground-class.html
e871a8817654a9c0da7d192624ebd294 *help/PWMLognBackground-class.html
0be9126f05b0d8b3a8390837b6ef545c *help/PWMUnscaled.html
c02ea7fc1f9ae04556140024e30f8682 *help/[,MotifEnrichmentReport-method.html
2e378a590bbdd862fe5e7de2f99383d2 *help/[,PWMCutoffBackground-method.html
09c235ed3c84ebcbd2c969631a75d1af *help/[,PWMEmpiricalBackground-method.html
14cbb947c6dc260d6f2651ccab7e2c4e *help/[,PWMGEVBackground-method.html
a9edfc927d7cb52231eee7621791a8de *help/[,PWMLognBackground-method.html
f03e1f2ad7fb08777b35e41c043d0673 *help/affinitySequenceSet.html
30323b834f715c6a69296c8a47c00700 *help/aliases.rds
b5d653a074c3e001a1179678f20ea6e0 *help/as.data.frame,MotifEnrichmentReport-method.html
b5d653a074c3e001a1179678f20ea6e0 *help/as.data.frame-MotifEnrichmentReport-method.html
b5d653a074c3e001a1179678f20ea6e0 *help/as.data.frame.html
9f18fb37bf980b836c3afe00931738a5 *help/cloverPvalue1seq.html
3be296744b627cc27ad39fcd89de39bb *help/cloverScore.html
e749244c1608bb582df18e602d2c3b89 *help/colMedians.html
a975840ff77e0f002491bf73f98d5516 *help/colSds.html
1e1e0b5273b9d0fb7b056f62224f4f93 *help/concatenateSequences.html
dcf1593d3d1085fdb64120aa7c638a8c *help/cutoffZscore.html
9de32d00366ce2ee648ec6373baae43a *help/cutoffZscoreSequenceSet.html
1ee2c5e7a9c0cebd5d3b994543bd0ff8 *help/divideRows.html
ab65802f915f1e247f4376b882092c32 *help/dot-inputPFMfromMatrixOrPWM.html
b8055129d8bf0266798d70d39a67b130 *help/dot-inputParamMotifs.html
c6df2b9d7ab31997a38c920c2584704f *help/dot-inputParamSequences.html
d2c0999a12d7b92b4246ac7e2a473dea *help/dot-normalize.bg.seq.html
0a501218ba14c186b5d2721d6789dc68 *help/dot-normargPfm.html
5fdcf4f3a0c5d8c0c08bf0ec4cc5b20d *help/dot-normargPriorParams.html
8e6564a3db811e5517bd672c275fa7cc *help/empiricalPvalue.html
3dff4b317d10f34f7dc68d03166a6775 *help/empiricalPvalueSequenceSet.html
33c0be856a43824409215922be3450aa *help/getBackgroundFrequencies.html
62b5e96921384ec620fc076ba1134bcc *help/getPromoters.html
d21d6c6fdfd094355758a9271c2b518a *help/gevPerSequence.html
48cb816af0c1f50c7ca9e74a5d568fe3 *help/groupReport,MotifEnrichmentResults-method.html
48cb816af0c1f50c7ca9e74a5d568fe3 *help/groupReport-MotifEnrichmentResults-method.html
48cb816af0c1f50c7ca9e74a5d568fe3 *help/groupReport.html
2bfda3058500b64766807c0dc6fdcba3 *help/keepFinite.html
10d17bfd00ab7fa27a771635c8ad89db *help/length,PWM-method.html
56b7846e8c515b55d05b457c0a44882c *help/logNormPval.html
6151a589583f6cbb3d7a3b14e1053662 *help/logNormPvalSequenceSet.html
c17c8740ccb4a3ebcdfff8b647aae310 *help/makeBackground.html
82149a108ed96d28f7895d2796c2fb38 *help/makePWMCutoffBackground.html
64d80ccf91af54c0db488bf6b5c5109e *help/makePWMEmpiricalBackground.html
3ca5fb3f4c989500d16ee71fd090f9a4 *help/makePWMGEVBackground.html
7f7dae419dd83aaa0827368da5bc0044 *help/makePWMLognBackground.html
7b41adc2a7f9db637143cc28ac936871 *help/makePWMPvalCutoffBackground.html
c5151b14ad4c40b0c0269fa37d72bf77 *help/makePWMPvalCutoffBackgroundFromSeq.html
34fe6e800f6a2633605722494c4327da *help/makePriors.html
2f63805eb45660412a47c309c844e465 *help/makeStartEndPos.html
d1ab03c752312e9ccdf4e47c4e7ba26f *help/matrixShuffleZscorePerSequence.html
7c62b315dc609981476163f52f086dbe *help/maxAligned.html
402adcad227a7b5893d00264614b0080 *help/motifDiffEnrichment.html
1b206b810f2eb80ed737752d7cace84e *help/motifEcdf.html
90c2796f0f4a0239f119d0448badee4a *help/motifEnrichment.html
9262f66c362a40cac888e61e34d9a81d *help/motifIC.html
469399e7a9153fb4fd7e51c9031f4bf4 *help/motifPrAUC.html
22d588d2711ad92eb97aec8aee254b02 *help/motifRankingForGroup,MotifEnrichmentResults-method.html
22d588d2711ad92eb97aec8aee254b02 *help/motifRankingForGroup-MotifEnrichmentResults-method.html
22d588d2711ad92eb97aec8aee254b02 *help/motifRankingForGroup.html
8573aeb3fc4b37eeaccaf99726da2ec5 *help/motifRankingForSequence,MotifEnrichmentResults-method.html
8573aeb3fc4b37eeaccaf99726da2ec5 *help/motifRankingForSequence-MotifEnrichmentResults-method.html
8573aeb3fc4b37eeaccaf99726da2ec5 *help/motifRankingForSequence.html
5763eff71bf88d9c115cf0f8085331f3 *help/motifRecoveryAUC.html
7c171a848c9a6ac1f4cc5ed635fc4968 *help/motifScores.html
6f122c318277968f806b97b6d055790c *help/motifScoresBigMemory.html
c05326ad2126befaeb3dca85fe1c3985 *help/motifSimilarity.html
c02ea7fc1f9ae04556140024e30f8682 *help/names,MotifEnrichmentReport-method.html
c02ea7fc1f9ae04556140024e30f8682 *help/names,MotifEnrichmentReport.html
0e9c21cde40672b12b103a07d0cad4cb *help/names,MotifEnrichmentResults-method.html
0e9c21cde40672b12b103a07d0cad4cb *help/names,MotifEnrichmentResults.html
10d17bfd00ab7fa27a771635c8ad89db *help/names,PWM-method.html
10d17bfd00ab7fa27a771635c8ad89db *help/names,PWM.html
f08f2e76dadcd6e007e6aec5878f62ad *help/names,PWMCutoffBackground-method.html
f08f2e76dadcd6e007e6aec5878f62ad *help/names,PWMCutoffBackground.html
3b5d3db481cd0224d966797ad31cc4c3 *help/names,PWMEmpiricalBackground-method.html
3b5d3db481cd0224d966797ad31cc4c3 *help/names,PWMEmpiricalBackground.html
8110c30560dbb9cea2c584e658fc9a28 *help/names,PWMGEVBackground-method.html
8110c30560dbb9cea2c584e658fc9a28 *help/names,PWMGEVBackground.html
3338054dc82c2a99776c59e65b0a2171 *help/names,PWMLognBackground-method.html
3338054dc82c2a99776c59e65b0a2171 *help/names,PWMLognBackground.html
c02ea7fc1f9ae04556140024e30f8682 *help/operators-MotifEnrichmentReport.html
0e9c21cde40672b12b103a07d0cad4cb *help/operators-MotifEnrichmentResults.html
10d17bfd00ab7fa27a771635c8ad89db *help/operators-PWM.html
f08f2e76dadcd6e007e6aec5878f62ad *help/operators-PWMCutoffBackground.html
3b5d3db481cd0224d966797ad31cc4c3 *help/operators-PWMEmpiricalBackground.html
8110c30560dbb9cea2c584e658fc9a28 *help/operators-PWMGEVBackground.html
3338054dc82c2a99776c59e65b0a2171 *help/operators-PWMLognBackground.html
1d1a15d58d6529ca146f5ee1dff93ed5 *help/paths.rds
718f442baf74c7a19a760762ef4cc907 *help/plot,MotifEnrichmentReport,missing-method.html
2bb68659adbbf52bfbe16f47fc350566 *help/plot,PWM,missing-method.html
718f442baf74c7a19a760762ef4cc907 *help/plot-MotifEnrichmentReport-missing-method.html
2bb68659adbbf52bfbe16f47fc350566 *help/plot-PWM-missing-method.html
93615eadfa620bcadd7937d43ad7d7b8 *help/plotMotifScores.html
0509b643f7a01f9bb62b8f10dd1433eb *help/plotMultipleMotifs.html
f45cdf74983b1519b0e0dc71301e8030 *help/plotPFM.html
fa563f7cd5efbbfa42e05300e6c0b1b4 *help/plotTopMotifsGroup,MotifEnrichmentResults-method.html
fa563f7cd5efbbfa42e05300e6c0b1b4 *help/plotTopMotifsGroup-MotifEnrichmentResults-method.html
fa563f7cd5efbbfa42e05300e6c0b1b4 *help/plotTopMotifsGroup.html
b4a25960c73e9edcfbd92b10b4699c00 *help/plotTopMotifsSequence,MotifEnrichmentResults-method.html
b4a25960c73e9edcfbd92b10b4699c00 *help/plotTopMotifsSequence-MotifEnrichmentResults-method.html
b4a25960c73e9edcfbd92b10b4699c00 *help/plotTopMotifsSequence.html
02938187325e3eedbbc69a4e435e180a *help/rankingProcessAndReturn.html
2c95c812c0b93676fbf50846efaeee79 *help/readJASPAR.html
602e8eaf2819002049f3fb7e25ff6477 *help/readMotifs.html
556c9d2dcad67933fbe3ba81426323e3 *help/readTRANSFAC.html
c8fa75a36250b31524ce24c230f4bfb9 *help/registerCoresPWMEnrich.html
28b9c87edc1987ddad585c8259ac56b0 *help/reverseComplement,PWM-method.html
28b9c87edc1987ddad585c8259ac56b0 *help/reverseComplement-PWM-method.html
d69cea34288fdc3f19a2c4994e279cd8 *help/scanWithPWM.html
c42b2693671f66be88e8bd037e749ec7 *help/seqLogoGrid.html
bf37eefc783d8152891a6179cbbf2e23 *help/sequenceReport,MotifEnrichmentResults-method.html
bf37eefc783d8152891a6179cbbf2e23 *help/sequenceReport-MotifEnrichmentResults-method.html
bf37eefc783d8152891a6179cbbf2e23 *help/sequenceReport.html
734c8fbff020d39e7f13cd7ec1abea02 *help/show,MotifEnrichmentReport-method.html
42553c1acf970449249bdc820734ee30 *help/show,MotifEnrichmentResults-method.html
4e9426b6cab55bc2e6acb731331b4aea *help/show,PWM-method.html
fbd6816ee6a0bc088e9c153ba043858c *help/show,PWMCutoffBackground-method.html
0c2f94c42cd30f11ead4fced791a6f5d *help/show,PWMEmpiricalBackground-method.html
c0b6b34eb2dc628f04e0e65b6aac646b *help/show,PWMGEVBackground-method.html
d8f975a403b8b0ff36f4ec6449a203b8 *help/show,PWMLognBackground-method.html
734c8fbff020d39e7f13cd7ec1abea02 *help/show-MotifEnrichmentReport-method.html
42553c1acf970449249bdc820734ee30 *help/show-MotifEnrichmentResults-method.html
4e9426b6cab55bc2e6acb731331b4aea *help/show-PWM-method.html
fbd6816ee6a0bc088e9c153ba043858c *help/show-PWMCutoffBackground-method.html
0c2f94c42cd30f11ead4fced791a6f5d *help/show-PWMEmpiricalBackground-method.html
c0b6b34eb2dc628f04e0e65b6aac646b *help/show-PWMGEVBackground-method.html
d8f975a403b8b0ff36f4ec6449a203b8 *help/show-PWMLognBackground-method.html
2e378a590bbdd862fe5e7de2f99383d2 *help/subsetting-PWMCutoffBackground.html
09c235ed3c84ebcbd2c969631a75d1af *help/subsetting-PWMEmpiricalBackground.html
14cbb947c6dc260d6f2651ccab7e2c4e *help/subsetting-PWMGEVBackground.html
a9edfc927d7cb52231eee7621791a8de *help/subsetting-PWMLognBackground.html
d3c20f2ab4b97029737c044f47cbc14c *help/toPWM.html
5cbd7abbac4d943fd12c21ce3b2fa15e *help/tryAllMotifAlignments.html
74fa1d5739ddce76ab347f567369f021 *help/useBigMemoryPWMEnrich.html
154dd40b59e79376489f2830fbca1dc9 *html/00Index.html
bc6618f5c0c647ae1388bb9d5bbf797f *html/DNAStringSetToList.html
1da157f4f06ac897c0cb69329a409162 *html/MotifEnrichmentReport-class.html
747cc559d5fc2486390b6a557e3e543e *html/MotifEnrichmentResults-class.html
697950523675efc2785b54768ef54f68 *html/PFMtoPWM.html
2da4571d998546f9f8f2d8839d6d515e *html/PWM-class.html
285afc31e6ec87c8bebe53d2d6da38c5 *html/PWMCutoffBackground-class.html
48a61224915024f445386d1cd332b2a0 *html/PWMEmpiricalBackground-class.html
d780e2a2f7fe7dcf35cfbae27ef02d8a *html/PWMEnrich-package.html
53a4ee6dd12f7d5ade151ace4dbe68f9 *html/PWMGEVBackground-class.html
3f8f32fb369c474cc32e3a1a2babb20c *html/PWMLognBackground-class.html
08af4f3bc2af5f7240238ac876761eae *html/PWMUnscaled.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
76bb436f32c4b22398e0b4cbe58c537b *html/affinitySequenceSet.html
dcbe55fad0f4605e20cc1992a205241d *html/as.data.frame-MotifEnrichmentReport-method.html
f84efcf35d23f2df461ce2c23556cabc *html/cloverPvalue1seq.html
8d96742189f611afec830efc22f7404e *html/cloverScore.html
a515b4abafd90bfcfbecbfe0293c7850 *html/colMedians.html
fc221be824d53449c9d21d1eba674152 *html/colSds.html
9b050f0ed72ae2368e4fc3cc6cdc00cb *html/concatenateSequences.html
4f8658e9ae7c17b3a7beea40b6ecc6c1 *html/cutoffZscore.html
cc394f21bcb428682349e5a7906b88a3 *html/cutoffZscoreSequenceSet.html
4013ae1592d91198d63824771a648797 *html/divideRows.html
d1f9e8ad4d7697e7c5519a4f17c4bf10 *html/dot-inputPFMfromMatrixOrPWM.html
c17d164e29cf516dc4c582f94e5ad15f *html/dot-inputParamMotifs.html
d527dc4636c6fcca287b32ee36d1b299 *html/dot-inputParamSequences.html
b2e850a41cbb46ba243f73d45cc39e9e *html/dot-normalize.bg.seq.html
6700b2a047f2592783b6fee3b0b4e1cb *html/dot-normargPfm.html
827d5fcfe2fe1aa63bc0f1da0dd0b59f *html/dot-normargPriorParams.html
1348f931b45f869389cfa3d159d3c2a8 *html/empiricalPvalue.html
95b6e7d9ad2543095d24a18a3251e57a *html/empiricalPvalueSequenceSet.html
da1a0e9ce5626af2941c803e295d0d38 *html/getBackgroundFrequencies.html
29f1191e011a41bcaa423413aa22021c *html/getPromoters.html
f9f79517359ee728818e4da59530498c *html/gevPerSequence.html
988b6304c5ff6cf60dfe9ec3a020516d *html/groupReport-MotifEnrichmentResults-method.html
69cbda5c9f5102ff10ffdddd2ce0e406 *html/keepFinite.html
6e4297c85ab94a7921e8fbd6994f436e *html/logNormPval.html
7a2efa60bf5ec901d400a28cfbfe8977 *html/logNormPvalSequenceSet.html
43277bd7ee9754015cbe11379eaded80 *html/makeBackground.html
d0cc0547b92c64ebe716fe0c2e6d958e *html/makePWMCutoffBackground.html
101e16f9a8014a6306bd3880894accca *html/makePWMEmpiricalBackground.html
64ad90a498270e2984dea43be000ffb6 *html/makePWMGEVBackground.html
4e779b5744d7a1c89c9accb17939b23e *html/makePWMLognBackground.html
f7b6a400766786284eea806c8342794c *html/makePWMPvalCutoffBackground.html
82fd026914d6d98111da4742e62ac18d *html/makePWMPvalCutoffBackgroundFromSeq.html
42a1b6db498d1b6ffe3f9ed698103f93 *html/makePriors.html
158486631e7848a4abcf989d9d4d8315 *html/makeStartEndPos.html
7ae7112be7041074dd8ed244421e3506 *html/matrixShuffleZscorePerSequence.html
1b1d6d5d5037ae0b3cdf5a426eb2baba *html/maxAligned.html
8f56fa98f922cd488979bf3d26f9a2d9 *html/motifDiffEnrichment.html
c479e08a322f07dbae8bf540885d7fcf *html/motifEcdf.html
5a0b8c114d6c66e686826e00268629b1 *html/motifEnrichment.html
d3d694472e3ec8a9f49154562241d484 *html/motifIC.html
358e48bf22c52ec7871f722bedac1153 *html/motifPrAUC.html
7aa263a818531c7cc74a2003b623cf46 *html/motifRankingForGroup-MotifEnrichmentResults-method.html
eaf6d1680348a5b9459b0ceb3cc921df *html/motifRankingForSequence-MotifEnrichmentResults-method.html
c5c30d9f7d9a83976f3af6524dc89a2e *html/motifRecoveryAUC.html
dc054c0b8c98542703d2c632ba4ab212 *html/motifScores.html
d9a1d243a6dcd75406469b4ef2c25311 *html/motifScoresBigMemory.html
3217e2995ecdd76e0a476133d2d04f41 *html/motifSimilarity.html
4f40d5d490fa662b5ff0ef9afac431af *html/operators-MotifEnrichmentReport.html
a2024049a212aa9caa72f9cff08d084e *html/operators-MotifEnrichmentResults.html
773e3ede5458f2443484d546af097c42 *html/operators-PWM.html
5ccd41937bb33731b5bb19578fcaaee6 *html/operators-PWMCutoffBackground.html
fdcc20ec076d757b1bdd0acd10261d64 *html/operators-PWMEmpiricalBackground.html
e47dc1b63ee29b2140388160135ba74a *html/operators-PWMGEVBackground.html
39bd2cb4b88cffed35806af3296fa7d2 *html/operators-PWMLognBackground.html
029d340a2628b6f319e281182fa85e82 *html/plot-MotifEnrichmentReport-missing-method.html
440f76f2b8159daec05c5c21f4bffda8 *html/plot-PWM-missing-method.html
bc016d533b2801217e6418cdf7022a7a *html/plotMotifScores.html
3ebd46da97c27ecb60704a6e56de063f *html/plotMultipleMotifs.html
c4f6bca2e7ba71373ba4507013af2a1e *html/plotPFM.html
bfafb7ce228355463ef4a488dae4489c *html/plotTopMotifsGroup-MotifEnrichmentResults-method.html
e19a8c614fcf61894457652c6b51e367 *html/plotTopMotifsSequence-MotifEnrichmentResults-method.html
da356b758cc72ed0d032a7d938f59140 *html/rankingProcessAndReturn.html
4700a824284944949848a475787c9b00 *html/readJASPAR.html
00b8f105c66e6f7424fb3d1dfeb2d6c9 *html/readMotifs.html
47446c52661e26688d2027cfd1b68858 *html/readTRANSFAC.html
1ae1dade12b840f8f51afe41c17b4395 *html/registerCoresPWMEnrich.html
612b1484fd7a18e3618f044fbcd2b80b *html/reverseComplement-PWM-method.html
089109872302179c253f29e4824ff01a *html/scanWithPWM.html
a798eee0de7f5bf26e6b3ebe2e7ba1db *html/seqLogoGrid.html
eea944ef70bcf2e462d6053f596a5515 *html/sequenceReport-MotifEnrichmentResults-method.html
096121033364490423300488b561cb14 *html/show-MotifEnrichmentReport-method.html
8fd5e9a002f5c25526e77fd899394b62 *html/show-MotifEnrichmentResults-method.html
5be453628e4eb3ce9b6241aef9faabae *html/show-PWM-method.html
f5b26a31ce6b617c130c3595e948964d *html/show-PWMCutoffBackground-method.html
105e7e1d53d7cf2b80374177faee1860 *html/show-PWMEmpiricalBackground-method.html
bad23c845a48f1746b3480c19b1a95a6 *html/show-PWMGEVBackground-method.html
8779649fd8cab0de643f2d940f9d89ae *html/show-PWMLognBackground-method.html
ddce3babe0964e42db1abcf516be3f66 *html/subsetting-PWMCutoffBackground.html
967619b7e9fc62c3d5a549dbcae7688b *html/subsetting-PWMEmpiricalBackground.html
fee9a25e5f8aa8d25fc776d66055ac94 *html/subsetting-PWMGEVBackground.html
9233adbfd8f74d87b01d67607ce975d4 *html/subsetting-PWMLognBackground.html
51ff84235bd064ed4367f56a0b0df2a0 *html/toPWM.html
b34ccf24d2dfe323170568beecad005b *html/tryAllMotifAlignments.html
ed90bbdb8167811207b70a5d6b3e2a2e *html/useBigMemoryPWMEnrich.html
f980cf6e1a56c37da2588b23b5e3525c *tests/test_clover.R
5ac6eb9e4d6cfbd62cf60c4c26bd8dba *tests/test_invalidInput.R
0b26bedee71d0a29f0c38fc32cda75ed *tests/test_motifEnrichment.R
2d850d37342371c6afeb0e055c33c19b *tests/test_similarity.R
