2b20034316abfd4c3b4aff58bb44fbe8 *CITATION
1aa2d12f0a6ca90a3d4920c9cd5445f1 *DESCRIPTION
6ce53ce2c804cc6d996ddd33f9edd5e7 *INDEX
4a89db09856d08e4edb816f39674e1e9 *LICENSE
20f333a3a793607c0245aa8761863e7c *Meta/Rd.rds
c45b615c7c4a3cce930e144ac9110370 *Meta/data.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
55c456a7c74646d6c9626563ed1ea67b *Meta/hsearch.rds
78c65dcaf90723942f18fb1d1908812d *Meta/links.rds
0fefa75a8bffa7806dda9edd06ee88c5 *Meta/nsInfo.rds
fc1ce14ae3b444bfd1a4886ae320bad8 *Meta/package.rds
0ffa5284685e3e71c3ee47ecc7e0d3c1 *Meta/vignette.rds
744ccf268c0962563c34190f951c5936 *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/TBSignatureProfiler
d4f057db1b1cca5eb1493e31cd9f0bda *R/TBSignatureProfiler.rdb
3199de39b76281b95d3be32c6d26f4c8 *R/TBSignatureProfiler.rdx
1f69165f6c2b13fd8df4525b1d658b75 *WORDLIST
a80a54d91159a39c6ba2cd4633540e5c *data/Rdata.rdb
d47f4a8ea7f0a396666d86a4873dc291 *data/Rdata.rds
11ef584c38f206bfe8ef2a606ef369fc *data/Rdata.rdx
4d02bb08070cfef5433ba043110826d0 *doc/index.html
974e80e0a2efb2659fa3a9e9a84c5977 *doc/tbspVignette.R
1cc99f7185a522d28aa6756aedb3d738 *doc/tbspVignette.Rmd
83d3f07ef8f72a980bcceac89e0b0de9 *doc/tbspVignette.html
289a2614bd3414780fb55019d89f1c88 *help/AnIndex
9bdc2f2247ed4fa4145e40d29c493d7e *help/Bootstrap_LOOCV_LR_AUC.html
719c6ae7d6d6a90592cbbd414fcb3e82 *help/COVIDsignatures.html
6ee1784b2b69338422a6a49811a62e61 *help/LOOAUC_simple_multiple_noplot_one_df.html
65b819b135c476266271331f45a1fb56 *help/ObtainSampleScore_OriginalModel.html
0732422f73e2e14d9bb669bd7c50e313 *help/OriginalTrainingData.html
a086a7643f0e640ae3665b63e5c341d4 *help/SignatureQuantitative.html
197ce8cc982fad5e37992fad9f98e98f *help/SulimanOriginalModel.html
19b66a12502d656296b91765d564d5ce *help/TBSPapp.html
aa40ef0892929144549f0c0c8acd9d8a *help/TBSignatureProfiler.rdb
29e47bc7d322c3d22ee21fb1227fec59 *help/TBSignatureProfiler.rdx
5852ec604dce54cc3b25eb41e91bc347 *help/TB_hiv.html
01a23ebb23b52b836fcc418e60224e02 *help/TB_indian.html
b30097b100ae28b932cb184dda4d7aec *help/TBcommon.html
c52fea4fa89b9475601614cd5fc46063 *help/TBsignatures.html
8ea46d30dc5542b7667c1dbb09baa045 *help/TBsignaturesSplit.html
1b73c1ae4f9258b15751ace01f805783 *help/addTBsignature.html
d54e7849817af9efc43550d171aaa6ad *help/aliases.rds
32f063ddc89127aea2dee9750b612fd1 *help/bootstrapAUC.html
6eb37152bd3ede968dbb35f1863c8d3f *help/common_sigAnnotData.html
ffc816e5a97a7a3db58f77eb04d1fa1d *help/compareAlgs.html
79f0d04ce5992ee16e5c486e289afdc3 *help/compareBoxplots.html
c0af7e161ea1c5e11ce8917ee5c4430a *help/cv_glmnet_OriginalModel.html
9e2b0448ad2e803e1dc6ee846e356252 *help/deseq2_norm_rle.html
68777e371a53a8c52022c2a4d5bf9a62 *help/distinctColors.html
9bdede0a84d33199ab45b46d86c92ef0 *help/dot-OriginalModel_NoRetraining.html
baf46772c73fcd2ccb038098f144021f *help/dot-OriginalModel_Retraining.html
d02a47cc91b06d7396105d6ed663d640 *help/evaluateOriginalModel.html
8b635a3150f78a2451ff563c2c79858a *help/knn_OriginalModel.html
abccd14ef0be181d8e6d1f02c3633281 *help/lda_OriginalModel.html
b3616699356d268c9c9063757cf710f1 *help/mkAssay.html
f2b8504d763301ef04f35abb5b46d387 *help/paths.rds
e819dbf982e3ac0756bf7e0e6b4eaf4a *help/plotQuantitative.html
096fb013e686b0e58891519f7d054787 *help/randomForest_OriginalModel.html
7c570a7b4d001e5a034e470800280eca *help/ref_combat_impute.html
e6a06ddf0a2188bbab78f3e1fbe29a5d *help/runTBsigProfiler.html
9aaa69636da904675da695efa2482e8e *help/sigAnnotData.html
c843a601b4110e933bf7d0740549570e *help/signatureBoxplot.html
4ebef26ede216cfbe1d65357cceb8ffe *help/signatureGeneHeatmap.html
954bfd5112b718131a328b1b8f76b339 *help/signatureHeatmap.html
b1af2f3c5c7de2bd67698d0372b307b4 *help/signatureROCplot.html
edb694f6ac7edbebf33a5f231e29ab33 *help/signatureROCplot_CI.html
c3ce784520bbaf394555805b9ca46b24 *help/subsetGeneSet.html
b3386e24e839e7780408906e273b2874 *help/svm_OriginalModel.html
d2fae3802658c27fc107d784dfac4f78 *help/tableAUC.html
7f3d198b53468734064b5449e60332fb *html/00Index.html
0df2c2ce6da7e644ce2749550fcb0f15 *html/Bootstrap_LOOCV_LR_AUC.html
8fcadec80fcbb0d2b535ea0d7e94a5e7 *html/COVIDsignatures.html
057a4ec4d378a64d6b2408ab71868408 *html/LOOAUC_simple_multiple_noplot_one_df.html
81ce2980473107d056b1e93ff03e54ad *html/ObtainSampleScore_OriginalModel.html
4a72157c11564aa0ced26b9473aac928 *html/OriginalTrainingData.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
b526bfdcebe8998e47f70da4cf7b1004 *html/SignatureQuantitative.html
29be4bb51bd59d7af05d3806e306db30 *html/SulimanOriginalModel.html
4229dab87fc26b257939df5218139043 *html/TBSPapp.html
a33264e68e132deb8c7f7abaac46d9ef *html/TB_hiv.html
68e894c3cd09845e387b305742e8b035 *html/TB_indian.html
eaf763699e443f5608fbddb62f974050 *html/TBcommon.html
a56c3a289e6f34d999b0f04f9d025b8e *html/TBsignatures.html
6dbd1a6ac1c525ed55665317bc6a0ff2 *html/TBsignaturesSplit.html
ada531d61d97458133e996ec64c93da4 *html/addTBsignature.html
5b379f0170c9a3cbc0b43303a94307b2 *html/bootstrapAUC.html
10919625997c70f0773b2041febf9e16 *html/common_sigAnnotData.html
2879a2878b4c42dd1976f23bcd18b57a *html/compareAlgs.html
984ab2325c0fecb433ec3eaa4c6534e7 *html/compareBoxplots.html
3dc8770bedfe7b7d005892411d0e4f1b *html/cv_glmnet_OriginalModel.html
70e14c3186f07be7cb5a1bd1ba2739b7 *html/deseq2_norm_rle.html
615522d0cb85ce380136ecb30b08eee1 *html/distinctColors.html
e1a53efae9c1d8d981efc38cff430602 *html/dot-OriginalModel_NoRetraining.html
3e3ab8c00768bc2242aea07cd58bf561 *html/dot-OriginalModel_Retraining.html
d572bcab5c7b81f1b74c9005552cc0b1 *html/evaluateOriginalModel.html
b2d9b1b38ef1c11c5f11d628c4a1803a *html/knn_OriginalModel.html
14300713e0600eb72562c7de3c66ea51 *html/lda_OriginalModel.html
48a91ebd63834b96c478bdd43d201b63 *html/mkAssay.html
8731811e4f908fa11b6c393e2dd2cd7a *html/plotQuantitative.html
4c600880fcc712fc11bedb03ee0d2fbe *html/randomForest_OriginalModel.html
debfe9e755072a7be529fb61c6565235 *html/ref_combat_impute.html
d34ecef0da3690e977c98f86e7f2fba0 *html/runTBsigProfiler.html
7170571db0c48e4b35b1535336cc7a59 *html/sigAnnotData.html
4e94b76554c4a448e3db335dd19bc6ec *html/signatureBoxplot.html
b61f95bb39a4fbc530896fa15e0a14b4 *html/signatureGeneHeatmap.html
510ca4b1f680c1e3d8b09023f41e6714 *html/signatureHeatmap.html
197a72470f5fcb54bfc0f66986f68e1f *html/signatureROCplot.html
f711abc41e2f586847d86d9b13cba8eb *html/signatureROCplot_CI.html
5b118aadd934e4a1055fb253439cbff7 *html/subsetGeneSet.html
bc9452aaefbbaa3ecbf3d2ce09d7c353 *html/svm_OriginalModel.html
2ff8e58a2eac7287a98ac5f79b06dc66 *html/tableAUC.html
28138ae5ec8a7562cc77a8a5e0776195 *shiny/app.R
8e11acd66d0951577db5aabe36cbe75a *shiny/server/server_auc.R
d433fbade4349011da922a26577817ad *shiny/server/server_profiler.R
9b2683582664775ded5189712806c747 *shiny/server/server_upload.R
ce33bdd8497585023d112bcc14ab2f6f *shiny/server/server_visualization.R
58d68c92344ac8d70597a0c830fc8025 *shiny/ui/ui_auc.R
9c109637ceba0860184ab9ab3a4f755a *shiny/ui/ui_profiler.R
277813c115b18778e435ba2736d5d72d *shiny/ui/ui_upload.R
cafebe548e88d24d54888ad8cacf294c *shiny/ui/ui_visualization.R
