dadd3e450180ebc4f80c88dd7e8e4278 *CITATION
afa44d3dc7b6ccd61107e85657966773 *DESCRIPTION
e6a79e7c99e35842e1dc556b24ed839a *INDEX
12309c917af9c839f485814c288bc115 *Meta/Rd.rds
01f38b79cda6135e23f640f6f5c49bc6 *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
c1f5da5eeddf68e40a011e38b9d7ba0a *Meta/hsearch.rds
b3698760542be757a96989bcd47dc13c *Meta/links.rds
2d38cc66443af05cac41369d3a5a96a0 *Meta/nsInfo.rds
732f0fee4c2b126a6cc0f4da908d3023 *Meta/package.rds
283c414bfe2fa56ad95bcb3dc921a928 *Meta/vignette.rds
0a64b21b579c5e322e762dc3537cff60 *NAMESPACE
307fe22573f83a54a85bbd8e7221a21a *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/XDE
e7cb76a7a19dd43b25a01946951e6f3a *R/XDE.rdb
8418187affb4fb5a8d73527a152bc0ec *R/XDE.rdx
5cb4d79da4e29bdbe3650483830e3645 *Test/DESCRIPTION
f7f93f51803ac442abd7995054370b9c *Test/NAMESPACE
a5791a84212fb7737e03c259792d759f *Test/R/initializeParams.R
57aedcdb475a1b0030e4efb5b87d588d *Test/R/zzz.R
f0e530c5b33390dda4b8e6a1c0b6bf76 *Test/man/Test-package.Rd
fec08ed0d8c051707e5d4a4a1cbc6b53 *Test/src/Cholesky.cpp
62dce6d234a47bf4e0b14678276538c4 *Test/src/Cholesky.h
d86050da09e6362a3c6a1111d356fc73 *Test/src/Matrix.h
d61e46450c3d8993ee5836e085906722 *Test/src/Matrix_v2.cpp
d5c51923648e06f6df1fc92dee7b316a *Test/src/Matrix_v2.h
477bb8c04fef0ae4dc99d8272d039490 *Test/src/Potential.h
0f4fe5e63314db19cea4035b5c964b06 *Test/src/PotentialA.h
cca2448e42fe7d695f40b42903cf0d80 *Test/src/PotentialB.h
86cdb65352c4dbab03aa0ae5665d5974 *Test/src/PotentialDDelta.h
87e56b757fed673eddb92d871e2de0af *Test/src/PotentialDDeltag.h
21bbf35e49a4f50c759aca20f1660d5a *Test/src/PotentialDelta.h
63d3de4eb7ba644e3aad4390a00e7bc4 *Test/src/PotentialDeltag.h
b10462fe47eaaa4b2e9c8ffe9d423129 *Test/src/PotentialFunction.h
fda0c95941f445f239f1460f6c173c5d *Test/src/PotentialNu.h
02897dffbf9201aaa3c4c3c73bce8a0d *Test/src/PotentialNug.h
4a9e4fe3137fd01a3eed5dbb6b12d4b4 *Test/src/PotentialPhi.h
297ac23fa074033eca74dedc29f221d4 *Test/src/PotentialPhiqg.h
945900e58973870059031f3b16253d43 *Test/src/PotentialR.h
f1df36c526fc233774d3da1b9c3b47ed *Test/src/PotentialRho.h
a575f4e233c4e36279d688369d251a9c *Test/src/PotentialSigma2.h
5462c8e0c0c0b381727bedb3246066ad *Test/src/PotentialSigma2qg.h
3f9967bd8e056f30c48b0a4ccd680e6d *Test/src/PotentialSum.h
dc210c70eff659313711b13dd3cd51c7 *Test/src/PotentialTau2.h
d705db8c2bc0bfd77bc01bb4b3c4983c *Test/src/PotentialX.h
1eb0d501f76c623a743c5a3c7de83141 *Test/src/PotentialXi.h
965247175b41d9c124f6b8b176d7a40f *Test/src/PotentialXqg.h
e274256ffd773227656ed330574de3e1 *Test/src/PotentialZero.h
94b5a685089f6d83aa1027840a343f6b *Test/src/Potential_v2.cpp
6d249fe443152633e504b90790f01ba7 *Test/src/Potential_v2.h
553b6acf64ff0c0b0ea9fb61dde4d0d1 *Test/src/Random.h
00b6169d9142965660180877185f42ea *Test/src/Random_v2.cpp
385af217d7cc7bfc8b1d840b7b295444 *Test/src/Random_v2.h
e72fedb0db72dc2cdca33726abd7ce5d *Test/src/Report.h
b6a26bf9a9f95282a0881a184bc85d2e *Test/src/ReportA.h
2a5a22755096a5e1032a066bc0d38c35 *Test/src/ReportAcceptance.h
f3cca8e3c5a380a68ba1a725db198bf1 *Test/src/ReportB.h
1f4b11b6fd12caf0820b0d51d46922ea *Test/src/ReportC2.h
a31bc3e460e9393a715d81ab589e72c3 *Test/src/ReportDDelta.h
88347eb81e8b736c9f213d6cc2ea26e4 *Test/src/ReportDelta.h
4cb29d5ee1a0fb1129c7e49526284102 *Test/src/ReportDiffexpressed.h
9d80a12ee47cb1eb8f1464197cdd5fa6 *Test/src/ReportGamma2.h
fa7a3d010178e314284adced8a94f864 *Test/src/ReportL.h
84bd3f9ce41730ea8c8ce27b7e0403fa *Test/src/ReportLambda.h
a22edbd421083a52385df3fcfd89dd4b *Test/src/ReportNu.h
3682b38cd3cd1cb60cc783ae3faece47 *Test/src/ReportPhi.h
476855b2d6ef56c5d6a26bdf688942df *Test/src/ReportPotential.h
4b99e341ae6a33c6cf4d2b7f6d8ba826 *Test/src/ReportProbDelta.h
fa46c365b6c230c6305512455f5cedd4 *Test/src/ReportR.h
230d097cb75e132d1e90a9245589bef6 *Test/src/ReportRho.h
78616b5067d7e6c2371c705afd0fbd9e *Test/src/ReportSigma2.h
94b6fdc9734ab031ab16798d698e7507 *Test/src/ReportT.h
5064388d08d62ba24213ad2a47248db0 *Test/src/ReportTau2R.h
d15afa46521e4dbb2f315584b3e961d8 *Test/src/ReportTau2Rho.h
2ebcfd09bdb2a97fccd2a7bd9628bab7 *Test/src/ReportTheta.h
bf938449d752ad8c6882fe7b103565c5 *Test/src/ReportXi.h
f7458b72943e167048a3121c6170d801 *Test/src/Rinterface_v2.cpp
b2cfe990784f73697f14da18b097539c *Test/src/Structure.cpp
198dc1813071d245fa7ebca87ebd2ca2 *Test/src/Structure.h
32c898ffb096b5c2dd61a05a3ef6df57 *Test/src/Update.h
3fdb7e0f5c1da965bf57a3442fd7e432 *Test/src/UpdateAMH.h
2fe6cc66d66816e633c6c66189f166a2 *Test/src/UpdateBMH.h
9137697f31c3f15ebfa31806e59e89fc *Test/src/UpdateC2Gibbs.h
f7cbe77fbabd0294fa262df82e852218 *Test/src/UpdateDeltaMH.h
6fe898a20ec962020db3fd34e8e464cc *Test/src/UpdateGamma2Gibbs.h
c6c1f13891722abfbe69de0c48e9da4b *Test/src/UpdateLMH.h
d92320f7dcd5322582122b9a4e27315a *Test/src/UpdateLambdaMH.h
e4606dabb40cd10baff1ddd930f4469b *Test/src/UpdateMultiplicativePositive.h
ade371ba9ff18a65d0669976f3dd6520 *Test/src/UpdatePhiMH.h
0af8d8ea11fe071ae4ee6f2d36b7a3f2 *Test/src/UpdateRC2MH.h
fe186d8487581c55869eb8d97049c496 *Test/src/UpdateRMH.h
6c70778977cec0416eb37ac3ed389e56 *Test/src/UpdateRhoGamma2MH.h
36b499b43fa4b59dc9f718b6e569f0a4 *Test/src/UpdateRhoMH.h
9a485dd9fd2b4d491896813e519168d0 *Test/src/UpdateSigma2MH.h
9bb039135dc0d02ebfd6340bf6f7d5ea *Test/src/UpdateTMH.h
a25b49e751c05f4084949bdf7b337e35 *Test/src/UpdateTau2RDDeltaMH.h
ae736eb3bc365b2a090701bba1396cdf *Test/src/UpdateTau2RMH.h
677457da38aee25838eb58045afbccd8 *Test/src/UpdateTau2RhoMH.h
42a60e6bbaeb109241bc324a598ff664 *Test/src/UpdateTau2RhoNuMH.h
e1f3a9a2ab214932b5d5e956d0947272 *Test/src/UpdateThetaMH.h
32b9e5ff52faea4ff1cf79345587f8ff *Test/src/UpdateXiGibbs.h
7f459f7c886e805c48da4dda97495ba7 *Test/src/Update_v2.cpp
56dadc345b33bf83b76320552d256a7f *Test/src/Update_v2.h
3482ffd1ec2a1704802c612d01abb137 *Test/src/Utility_v2.cpp
662bb7721961daa8a26d4ca8cb13153d *Test/src/Utility_v2.h
aa9f3a7131bcb7999d9c3ac1370125bf *Test/src/diffExpressed_main.cpp
82bf595e98cee92c002d264350c2375d *Test/src/mainTestHyper_v2.cpp
40d77140a87e1284df82a1348850671b *Test/vignettes/callC.R
15f724fd1267c71692dc3b85269c04c9 *data/expressionSetList.RData
6eaffe18e321aad49b30031e6cc60ca0 *data/xmcmc.RData
f1602f2282bfcb8bfd8c6c48e62c1075 *doc/XDE.R
79c8779746ab2075a6795fbb88755d16 *doc/XDE.Rnw
e791bece2ac4c755030a8cff2d8ab341 *doc/XDE.pdf
6130d1b9ab0c1d95d4627f3b30715aa7 *doc/XdeParameterClass.R
347014d460ad0e87e300db1327d6964f *doc/XdeParameterClass.Rnw
78522445a2ae40088f7cb6d7c4d5f0c8 *doc/XdeParameterClass.pdf
e836fe375bbd1b7e52d0b44593384f76 *doc/index.html
37eb62c5b8dac47c5eaacd35e9c127cb *help/$,Parameters-method.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/$,XdeMcmc-method.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/$.html
77a1950be6d784ae8cd985b956bad496 *help/AnIndex
364a1637eab49651daa8b5d8b24e69a3 *help/ExpressionSetList-class.html
434ae6ac2c5a3ad1833c8c4d169ea148 *help/ExpressionSetList-methods.html
37eb62c5b8dac47c5eaacd35e9c127cb *help/Parameters-class.html
f8a1767ad24cd46562e87a4c9cedd89d *help/XDE.rdb
c422d388760b40a001dbca330e7befdb *help/XDE.rdx
8d2b13ea5d8c441e1821689a1fc64a4a *help/XdeMcmc-class.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/XdeParameter-class.html
434ae6ac2c5a3ad1833c8c4d169ea148 *help/[,ExpressionSetList,ANY,ANY,ANY-method.html
364a1637eab49651daa8b5d8b24e69a3 *help/[,ExpressionSetList-method.html
37eb62c5b8dac47c5eaacd35e9c127cb *help/[[,Parameters-method.html
b3279250587e0966280b56f713ab121e *help/aliases.rds
8d2b13ea5d8c441e1821689a1fc64a4a *help/bayesianEffectSize,XdeMcmc-method.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/bayesianEffectSize.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/burnin,XdeParameter-method.html
3237031f91efcaca939a715223d9c1ea *help/burnin.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/calculateBayesianEffectSize,XdeMcmc-method.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/calculateBayesianEffectSize.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/calculatePosteriorAvg,XdeMcmc-method.html
e333531d00bb7149b41039cce2b2126f *help/calculatePosteriorAvg.html
37eb62c5b8dac47c5eaacd35e9c127cb *help/coerce,XdeParameter,Parameters-method.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/coerce,XdeParameter,Params-method.html
364a1637eab49651daa8b5d8b24e69a3 *help/coerce,list,ExpressionSetList-method.html
364a1637eab49651daa8b5d8b24e69a3 *help/dim,ExpressionSetList-method.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/directory,XdeMcmc-method.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/directory,XdeParameter-method.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/directory.html
dc64fc4e3d9f96ac78d4bee6d17b1323 *help/empiricalStart.html
184d67b2ffaa8384da0ec65963685c2b *help/expressionSetList.html
364a1637eab49651daa8b5d8b24e69a3 *help/featureNames,ExpressionSetList-method.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/featureNames,XdeMcmc-method.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/firstMcmc,XdeParameter-method.html
825416abde90814ab5048e6d51808420 *help/firstMcmc.html
364a1637eab49651daa8b5d8b24e69a3 *help/geneCenter,ExpressionSetList-method.html
ca6b66890b6a00157bb2aadbf87f1e0c *help/geneCenter.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/hyperparameters,XdeParameter-method.html
cc5ed133efa4c89f1ef3e161182c1105 *help/hyperparameters.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/initialize,XdeMcmc-method.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/initialize,XdeParameter-method.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/iterations,XdeMcmc-method.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/iterations,XdeParameter-method.html
37e4b21691a679fec48f33a51ba6c709 *help/iterations.html
364a1637eab49651daa8b5d8b24e69a3 *help/lapply,ExpressionSetList-method.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/lastMcmc,XdeMcmc-method.html
c039c41f18ddab595dc563c17482e57b *help/lastMcmc.html
364a1637eab49651daa8b5d8b24e69a3 *help/nSamples,ExpressionSetList-method.html
364a1637eab49651daa8b5d8b24e69a3 *help/nSamples.html
364a1637eab49651daa8b5d8b24e69a3 *help/nrow,ExpressionSetList-method.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/nrow,XdeMcmc-method.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/output,XdeMcmc-method.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/output,XdeParameter-method.html
9c70157c1234639b04440c8bf7ec476e *help/output.html
364a1637eab49651daa8b5d8b24e69a3 *help/pData,ExpressionSetList-method.html
d6fc2c544c05ba628b5b1f2d0ef32252 *help/pairs,data.frame-method.html
d6fc2c544c05ba628b5b1f2d0ef32252 *help/pairs,matrix-method.html
d6fc2c544c05ba628b5b1f2d0ef32252 *help/pairs-methods.html
d6fc2c544c05ba628b5b1f2d0ef32252 *help/pairs.html
e07d5d63b4155a345ff2f5ecfda9bdc7 *help/paths.rds
364a1637eab49651daa8b5d8b24e69a3 *help/pca,ExpressionSetList-method.html
364a1637eab49651daa8b5d8b24e69a3 *help/phenotype,ExpressionSetList,character-method.html
434ae6ac2c5a3ad1833c8c4d169ea148 *help/phenotype.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/phenotypeLabel,XdeParameter-method.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/phenotypeLabel.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/plot,XdeMcmc,ANY-method.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/plot,XdeMcmc-method.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/posteriorAvg,XdeMcmc-method.html
b8e3b45960495dc4791d81eb426ab8f9 *help/posteriorAvg.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/savedIterations,XdeParameter-method.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/savedIterations.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/seed,XdeMcmc-method.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/seed,XdeParameter-method.html
853d08ba0b5c57da0f17598664efa604 *help/seed.html
37eb62c5b8dac47c5eaacd35e9c127cb *help/show,Parameters-method.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/show,XdeMcmc-method.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/show,XdeParameter-method.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/showIterations,XdeParameter-method.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/showIterations.html
ab6e1f4c262974ef0a1445bf1c813e92 *help/ssStatistic.html
364a1637eab49651daa8b5d8b24e69a3 *help/standardizeSamples,ExpressionSetList-method.html
9eead63c153918acf2e0542aad546e00 *help/standardizeSamples.html
364a1637eab49651daa8b5d8b24e69a3 *help/studyCenter,ExpressionSetList-method.html
18c5ea4b957af22cca42e9b7e52bb409 *help/studyCenter.html
8d2b13ea5d8c441e1821689a1fc64a4a *help/studyNames,XdeMcmc-method.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/studyNames,XdeParameter-method.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/studyNames.html
c21f2e936d561cd406e2f745c2ef25f6 *help/symbolsInteresting.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/thin,XdeParameter-method.html
a222d313aecc7d61b7fa8897857f1d1a *help/thin.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/tuning,XdeParameter-method.html
37d2aeac05434c1876c3cac5e655397a *help/tuning.html
50c52ec6bd4dc3272cb4c1cf4f98fa30 *help/updates,XdeParameter-method.html
1da816361a07701296038f5b3d18670c *help/updates.html
07b7d93c651827b258b40f14337b13aa *help/xde.html
9ed3ce75e642e462bd01d95063e59b49 *help/xmcmc.html
7c6cadfc0453f8e13d76d82cf39336df *help/xsScores.html
364a1637eab49651daa8b5d8b24e69a3 *help/zeroNu,ExpressionSetList-method.html
5ed2aab0eec0468ceb6fb9df8216d733 *help/zeroNu.html
7fe1d3f3626f00a185976f8731843a9c *html/00Index.html
c533eb650a98a157aaf9a824c5c3803c *html/ExpressionSetList-class.html
42748cac939001c614bd36b7013f395e *html/ExpressionSetList-methods.html
b8c7f52de57bdf7c5352b728059cd138 *html/Parameters-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
df91ebc667bd514ac8b15d3050b8b584 *html/XdeMcmc-class.html
a2145769c3804d4cf97f88398c2d3da2 *html/XdeParameter-class.html
c43e5e0669e07d76054749ea74cee10e *html/burnin.html
87916505d085b98d426f9f0709193df9 *html/calculatePosteriorAvg.html
b55eacfd09dab445a3d8ffa840d20eae *html/empiricalStart.html
6f461537baf7861d04d8ce29ca33b66b *html/expressionSetList.html
ff8f52e398c393ca0ed10905b4cf7444 *html/firstMcmc.html
e6c2176f4612b7ed8c2319f4eb3159fb *html/geneCenter.html
1c1ae337a67764af05e584d9460991b6 *html/hyperparameters.html
2bbbd96f581fd0a8be1d45dc1bc09656 *html/iterations.html
52c74683cb5cc9519cab50eaa53a78cf *html/lastMcmc.html
38d1fe7a10611574c253a8161282f9b2 *html/output.html
c0df73d71e56a98cf5fb8413a8cc6142 *html/pairs.html
8b26c8692777099b3b82335cd4ae21a1 *html/posteriorAvg.html
43b7bcc9479c1cc7c2131ca2bfbf660b *html/seed.html
78aef0a00cb6e32838d5efb9198c7536 *html/ssStatistic.html
2eb65e24c4f322f1f3db904cdab76c1d *html/standardizeSamples.html
10744d862d7660a1d3d2b7e509a6176f *html/studyCenter.html
9954f4c1d744f9c6ce269f033fa447ac *html/symbolsInteresting.html
cf77b94d331005d9e15e1c584b170894 *html/thin.html
05a729d6ee31fe8aaaa49b28ebd1c6dd *html/tuning.html
1cc8db9750d413025cbff2b55f5d22e3 *html/updates.html
bfff9ef98479a4b1748af3a2cb4e8e57 *html/xde.html
545c69d8a6f91aec360005f87ffd1109 *html/xmcmc.html
1f23c64c14a2c857b056bbfd09121b95 *html/xsScores.html
600af920c343897324a98aa5580c6a6c *html/zeroNu.html
80f0fe6c6436583ec493a6191bc25671 *libs/i386/XDE.dll
f1695c8a91e58e89032e4a76e1ec4a9d *libs/x64/XDE.dll
797b22c00640d6cd32a88ded2c2118da *logFiles/BES.rda
dc3c5166085e267854fe98771e73a530 *logFiles/a.log
ad34d91fd0ad755f4212858f722b9a9f *logFiles/b.log
32fbe02505e7faf923b7c23f6088babf *logFiles/c2.log
f52500ce0b3a3e98a856d3e4b5bd4bed *logFiles/gamma2.log
c31174c0048209db84dec0bf94345ada *logFiles/l.log
95abe71d48efd7dd5e2fe292c7b122c7 *logFiles/lambda.log
977fa06b76b84bbae0b7c93f9fcf28fd *logFiles/postAvg.rda
968dc50ed4291d9a9ae6f28017372d45 *logFiles/r.log
f411ff0d92fadb3f0b2f8b0d7df276d2 *logFiles/rho.log
f28e181368601aa0191f0abb0ab6f7cd *logFiles/t.log
b3ab7ea82211bd858fe88dd503c38b18 *logFiles/tau2R.log
3cec2d108de5ca5c51c857144ec40d2f *logFiles/tau2Rho.log
eead9c0da05f6bec1dbbc56f87608f8a *logFiles/theta.log
4d4f51e3b833474e3a7f9383810731c6 *logFiles/xi.log
048e5f83941ed01c08cbb64feda44b43 *scripts/ModelA_B.R
e5afb8d7e3822b66eea878875cd52e53 *scripts/ModelC_D.R
2e65609cfbf236110f7faaac91df7659 *scripts/ModelI_II.R
0784fab64b8b722a5d3443048a49c9f5 *scripts/v2Interface.R
5dc3dacfb978e4261a515b3d7064268f *unitTests/Makefile
